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BioLiP
>protein
VKPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDP
QSEDMFDNGSFLRRRKR

The query sequence (length=97) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2hdc:A 97 97 1.0000 1.0000 1.0000 2.76e-70
2 6ako:C 97 95 0.7010 0.7010 0.7158 2.17e-48 6akp:C, 6lbm:C, 6o3t:A, 6o3t:B
3 8vfy:O 102 97 0.6495 0.6176 0.6495 3.06e-43 8vfz:O, 8vfz:P, 8vg1:O, 8vg2:O, 7vox:A, 7vox:C, 7vox:H, 7vox:B, 1vtn:C
4 7cby:C 100 96 0.6495 0.6300 0.6562 5.43e-42
5 7vov:A 93 92 0.5979 0.6237 0.6304 7.80e-42 7vou:C, 7vov:B
6 7yze:A 87 80 0.5361 0.5977 0.6500 9.70e-35 5x07:F, 5x07:C, 5x07:L, 5x07:I, 7yzf:C
7 2c6y:A 98 96 0.5258 0.5204 0.5312 1.08e-32 2c6y:B
8 8bzm:E 95 94 0.4948 0.5053 0.5106 4.78e-31 8bzm:I, 8bzm:A, 8bzm:J
9 7yza:A 122 79 0.4536 0.3607 0.5570 1.22e-28 7yz7:A, 7yzc:A, 7yzd:A
10 7yzg:A 121 79 0.4227 0.3388 0.5190 8.23e-26
11 7yzb:A 125 98 0.4124 0.3200 0.4082 1.28e-24
12 3g73:B 95 82 0.3918 0.4000 0.4634 6.80e-21 7fj2:A, 7fj2:B, 7fj2:E, 7fj2:F, 3g73:A
13 3qrf:G 82 79 0.3402 0.4024 0.4177 3.84e-19 3qrf:F, 3qrf:H, 3qrf:I, 4wk8:F, 4wk8:G
14 2a07:J 83 79 0.3299 0.3855 0.4051 4.21e-19 2a07:K, 2a07:F, 2a07:G, 2a07:H, 2a07:I, 2as5:F, 2as5:G
15 7tdw:A 90 79 0.3402 0.3667 0.4177 5.83e-19 8sro:A, 8sro:C, 8sro:D, 8sro:B, 8srp:J, 8srp:G, 8srp:E, 8srp:D, 8srp:B, 8srp:A, 8srp:F, 8srp:C, 7tdx:A
16 6ncm:A 91 81 0.3814 0.4066 0.4568 6.11e-19 6nce:A, 6ncm:B
17 6el8:A 89 83 0.3814 0.4157 0.4458 1.61e-17 6el8:D
18 3co6:C 91 81 0.3608 0.3846 0.4321 7.24e-17 3co7:C, 3co7:F, 3coa:C, 3coa:F, 5dui:A, 5dui:B, 6lbi:C, 6lbi:D, 6lbi:G, 6lbi:H, 6lbi:K, 6lbi:L, 4lg0:A
19 2uzk:A 97 95 0.4124 0.4124 0.4211 6.18e-16 2uzk:C
20 3l2c:A 85 79 0.3402 0.3882 0.4177 6.68e-16
21 4en2:B 149 46 0.1546 0.1007 0.3261 0.42 6cri:Y, 6cri:Z, 4emz:C, 4emz:B
22 5njx:A 413 20 0.1031 0.0242 0.5000 1.2 7a6w:AAA, 7a6w:BBB, 7a6x:AAA, 7aot:A, 7aou:A, 7apq:A, 7aps:A, 7aps:B, 7apt:A, 7apw:A, 7awf:A, 7awx:A, 7awx:B, 7b9y:A, 7b9z:A, 7ba0:A, 8ba6:A, 8baj:A, 5bxj:A, 8cca:A, 8ccb:A, 8ccc:A, 8ccd:A, 8cce:A, 8ccf:A, 8ccg:A, 8cch:A, 8chn:A, 8chp:A, 8chq:A, 8chr:A, 5dit:A, 5diu:A, 5div:A, 4drh:A, 4drh:D, 4dri:A, 4drk:A, 4drk:B, 4drm:A, 4drn:A, 4dro:A, 4drp:A, 4drq:A, 7ett:A, 7etu:A, 7etv:A, 9eu6:A, 9eu7:A, 9eu7:B, 9eu8:A, 9eu8:B, 9eu9:A, 9eu9:B, 9eua:A, 9eua:B, 9eub:A, 9eub:B, 9euc:A, 9euc:B, 9eud:A, 9eud:B, 9eue:A, 9eue:B, 9ey3:A, 9ey4:A, 4jfi:A, 4jfj:A, 4jfk:A, 4jfl:A, 4jfm:A, 3o5f:A, 3o5r:A, 5obk:A, 8pc2:G, 8pc2:H, 8pj8:A, 8pja:A, 7r0l:A, 8r5k:A, 6saf:A, 4tw6:A, 4tw7:A, 4tx0:A, 6tx4:A, 6tx5:A, 6tx6:A, 6tx7:A, 6tx9:A, 6txx:A, 4w9o:A, 4w9o:E, 4w9p:A, 4w9p:E, 4w9q:A
23 8cqv:A 202 31 0.1134 0.0545 0.3548 2.0 8cqv:B
24 7ung:HO 389 43 0.1340 0.0334 0.3023 2.6 8otz:HO, 7rro:HO, 7un1:BG
25 3tqp:A 418 22 0.0928 0.0215 0.4091 8.4 3tqp:B
26 6skz:A 2638 34 0.1134 0.0042 0.3235 9.5 6sl0:A, 6sl0:B
27 6sl1:A 2652 34 0.1134 0.0041 0.3235 9.7 6sky:A, 6sky:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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