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BioLiP
>protein
VIPKGKPKSGRVWKDRSKKRFSQMLQDKPLRTSWQRKMKERQERKLAKDFARHLEEEKERRRQEKKQRRAENLKRRLENE
RKAEVVQVIRNPAKLKRAKKKQLRSIEKRDTLALLQK

The query sequence (length=117) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8fl2:NZ 117 117 1.0000 1.0000 1.0000 7.76e-77 8fl0:NZ, 8fl3:NZ, 8fl4:NZ, 8ink:r, 8ipd:r, 8ipx:r, 8ipy:r
2 8p0u:A 621 75 0.1880 0.0354 0.2933 0.088 8p0b:A, 8p0g:A, 8z85:A, 8z8j:A, 8z8n:A, 8z8x:A, 8z90:A, 8z97:A, 8z98:A, 8z9h:A, 8z9h:H, 8z9q:A, 8z9r:A, 8z9r:H
3 3s5m:A 1094 49 0.1453 0.0155 0.3469 0.46 7di7:A, 7dij:A, 8ho4:A, 8ho5:A, 3s5h:A, 7vpe:A, 8wxw:A, 8wxz:A, 8wyu:A
4 7dia:A 1072 49 0.1453 0.0159 0.3469 0.48 3s5k:A, 8wyt:A, 8wyx:A, 8wyy:A
5 6x6x:A 417 54 0.1453 0.0408 0.3148 3.6 2wn6:A, 2wn7:A, 6x6r:A, 6x6r:B, 6x6v:A, 6x6v:B, 6x6v:C, 6x6v:D, 6x6x:B
6 4zn3:A 147 26 0.1026 0.0816 0.4615 4.3
7 5it7:MM 136 67 0.1880 0.1618 0.3284 4.6 6uz7:AM
8 5mnv:I 286 64 0.1111 0.0455 0.2031 5.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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