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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
VIAEVSTQLSEVVGVIERHLEPTLLAVHLYGSAVDGGLKPHSDIDLLVTVTVRLDETTRRALINDLLETSASPGESEILR
AVEVTIVVHDDIIPWRYPAKRELQFGEWQRNDILAGIFEPATIDIDLAILLTKAREHSVALVGPAAEELFDPVPEQDLFE
ALNETLTLWNSPPDWAGDDRNVVLTLSRIWYSAVTGKIAPKDVAADWAMERLPAQYQPVILEARQAYLGNEEDRLASRAD
QLEEFVHYVKGEITKVVG

The query sequence (length=258) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7uy4:A 258 258 1.0000 1.0000 1.0000 0.0 7uy4:B
2 5lpa:A 267 255 0.4380 0.4232 0.4431 9.96e-70 6fzb:A, 6fzb:B, 5g4a:A, 5g4a:B, 5lpa:B, 5luh:A, 5luh:B
3 6xz0:A 250 226 0.2829 0.2920 0.3230 3.85e-38 6xxq:A, 6xxq:B
4 6t5e:A 439 55 0.0659 0.0387 0.3091 0.93
5 4l0e:A 440 117 0.1357 0.0795 0.2991 1.8 4l0f:A, 4pwv:A, 4pxh:A, 4pxh:C, 4pxh:E
6 1no5:B 102 87 0.1085 0.2745 0.3218 3.1 1no5:A
7 7bxo:E 125 38 0.0543 0.1120 0.3684 3.9 7aer:A, 7bxo:A, 6m6v:A
8 3hj1:B 387 23 0.0465 0.0310 0.5217 4.3 3hiy:A, 3hiy:B, 3hj1:A
9 5it7:OO 198 26 0.0504 0.0657 0.5000 4.5 6uz7:AO
10 6p14:A 265 26 0.0504 0.0491 0.5000 5.0
11 4c6h:A 291 82 0.1163 0.1031 0.3659 5.0
12 6p07:A 270 26 0.0504 0.0481 0.5000 5.2
13 6p07:B 303 26 0.0504 0.0429 0.5000 5.5 6nyv:B, 6nyw:B, 6p07:C, 6p07:D, 6p07:E, 6p07:F, 6p10:B, 6p11:B, 6p12:B, 6p13:B
14 2o2c:A 564 59 0.0620 0.0284 0.2712 6.8 2o2c:B, 2o2c:C
15 3bjs:B 376 72 0.0891 0.0612 0.3194 9.2 3bjs:A
16 4n4j:A 497 55 0.0620 0.0322 0.2909 9.8 4n4k:A, 4n4l:A, 4n4m:A, 4rwm:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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