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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
VHYRTIDSPIGPLTLAGHGSVLTNLRMLEQTSRTHWTPDPGAFSGAVDQLNAYFAGELTEFDVELDLRGTDFQQRVWKAL
LTIPYGETRSYGEIADQIGAPGAARAVGLANGHNPIAIIVPCHRVIGASGKLTGYGGGINRKRALLELEKSRAPADLTLF
D

The query sequence (length=161) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4wx9:A 161 161 1.0000 1.0000 1.0000 5.06e-118
2 6ga0:A 154 155 0.3416 0.3571 0.3548 7.42e-23
3 7e1p:A 150 150 0.3168 0.3400 0.3400 5.95e-22 7dqq:A
4 1eh6:A 168 163 0.3789 0.3631 0.3742 6.08e-22 1eh7:A, 1eh8:A, 1t38:A, 1t39:A, 1t39:B, 1yfh:C, 1yfh:A, 1yfh:B
5 3kzy:A 162 156 0.3478 0.3457 0.3590 9.17e-17 3kzy:B, 3kzz:A, 3l00:A, 6y8p:A
6 4enj:A 108 85 0.2050 0.3056 0.3882 2.31e-12 4enk:A, 4enm:A, 4enn:A, 4enn:B, 3gx4:X, 3gyh:X, 4hdu:A, 4hdv:A
7 6aog:A 511 75 0.1366 0.0431 0.2933 0.31 6aog:B, 6aoh:A, 6aoh:B, 6aoi:A, 6aoi:B, 4eck:A, 4eck:B, 4eil:A, 4eil:B, 4eil:C, 4eil:D, 4eil:E, 4eil:F, 4eil:G, 4eil:H, 4ky4:A, 4ky4:B, 4ky4:C, 4ky4:D, 4ky4:E, 4ky4:F, 4ky4:G, 4ky4:H, 4kya:A, 4kya:B, 4kya:C, 4kya:D, 4kya:E, 4kya:F, 4kya:G, 4kya:H, 6n1s:A, 6n1s:B, 6n1t:A, 6n1t:B, 5t0l:A, 5t0l:B
8 7fgx:D 563 75 0.1366 0.0391 0.2933 0.35 7fgw:A, 7fgw:B, 7fgw:C, 7fgw:D, 7fgx:A, 7fgx:B, 7fgx:C, 7fgy:A, 7fgy:B, 7fgy:C, 7fgy:D
9 2o36:A 654 21 0.0621 0.0153 0.4762 5.4 1s4b:P
10 8yo4:A 442 38 0.0870 0.0317 0.3684 5.6 8ylu:A, 8ylu:B, 8yo4:B, 8yo7:A, 8yo7:B, 8yon:A, 8yon:B
11 1lk7:A 229 33 0.0932 0.0655 0.4545 9.8 1lk7:B, 1lk7:C, 1lk7:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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