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BioLiP
>protein
VGTNTGGVLVITDTIIVKSGQTYDGKGIKIIAQGMGDGSQSENQKPIFKLEKGANLKNVIIGAPGCDGIHCYGDNVVENV
VWEDVGEDALTVKSEGVVEVIGGSAKEAADKVFQLNAPCTFKVKNFTATNIGKLVRQNGNTTFKVVIYLEDVTLNNVKSC
VAKSDSPVSELWYHNLNVNNCKTLFEFPSQSQIHQY

The query sequence (length=196) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4yz0:A 198 196 0.9898 0.9798 0.9898 3.21e-142 4ew9:A, 4ew9:B, 3t9g:A, 3t9g:B, 4yz0:B, 4yza:A, 4yza:B, 4yzq:A, 4yzq:B, 4yzx:A, 4yzx:B, 4z03:A, 4z03:B, 4z05:A, 4z05:B, 4z06:A, 4z06:B
2 1ee6:A 197 179 0.5051 0.5025 0.5531 8.54e-67
3 3b4n:A 314 137 0.2602 0.1624 0.3723 1.95e-10 3b4n:B, 3b8y:A, 3b90:A, 3b90:B
4 4u49:B 318 134 0.2602 0.1604 0.3806 7.79e-10
5 3b8y:B 294 101 0.2296 0.1531 0.4455 9.61e-10
6 7jzw:A 427 39 0.0816 0.0375 0.4103 0.28 6b44:A, 6b45:A, 6b47:A, 6b48:A, 7ecv:A, 7ecw:A, 7elm:A, 7elm:K, 7eln:A, 7eln:X, 7eqg:B, 7jzx:A, 7jzy:A, 7jzz:A, 6ne0:A, 7t3j:A, 7t3k:A, 7t3k:a, 7t3l:A, 7t3l:a, 7taw:A, 7taw:a, 7tax:A, 5uz9:A, 6vqv:C, 6vqw:B, 6vqx:B, 7we6:A, 7we6:X, 6whi:A, 7yhs:A
7 6w1x:A 314 39 0.0816 0.0510 0.4103 0.31
8 1pj6:A 828 97 0.1633 0.0386 0.3299 1.8 3gsi:A, 1pj5:A, 1pj7:A
9 3ib7:A 295 35 0.0765 0.0508 0.4286 6.8 2hy1:A, 2hyo:A, 2hyp:A, 3ib8:A
10 1n4m:A 345 81 0.1071 0.0609 0.2593 7.3 1gux:B, 1n4m:B, 1o9k:A, 1o9k:B, 1o9k:C, 1o9k:D, 1o9k:E, 1o9k:F, 1o9k:G, 1o9k:H, 2r7g:A, 2r7g:C
11 6gau:A 1088 46 0.0765 0.0138 0.3261 7.5 5bs8:A, 5bs8:B, 5bs8:C, 5bs8:D, 5bta:A, 5bta:B, 5bta:C, 5bta:D, 5btc:A, 5btc:B, 5btc:C, 5btc:D, 5btd:A, 5btd:B, 5btd:C, 5btd:D, 5btf:A, 5btf:B, 5btf:C, 5btf:D, 5btg:A, 5btg:B, 5btg:C, 5btg:D, 5bti:A, 5bti:B, 5bti:C, 5bti:D, 5btl:A, 5btl:B, 5btl:C, 5btl:D, 5btn:A, 5btn:B, 5btn:C, 5btn:D, 9foy:A, 9foy:B, 6gau:B, 7ugw:A, 7ugw:B, 7ugw:C, 7ugw:D
12 5yo9:B 366 55 0.0714 0.0383 0.2545 8.8 5yoa:B
13 6t1z:A 393 27 0.0612 0.0305 0.4444 9.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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