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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
VGLPYSELLSRFFNILRTPKFRIPPPVCLRDGKKTIFSNIQDIAEKLHRSPEHLIQYLFAELGTSGSVDGKRLVIKGKFQ
SKQMENVLRRYILEYVTCKTCKSINTELKRENRLFFMVCKSCGSTRSVSS

The query sequence (length=130) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8s8h:l 134 134 0.9923 0.9627 0.9627 3.57e-90 8cas:s, 6fyx:l, 6fyy:l, 6gsm:l, 6gsn:l, 3jap:l, 8s8i:l
2 8pj1:s 159 138 0.5769 0.4717 0.5435 5.38e-44 7a09:4, 8oz0:U, 8ppl:Is, 7qp6:s, 6ybv:s, 6zmw:s, 6zp4:4
3 2d74:B 137 131 0.3385 0.3212 0.3359 3.62e-28 2dcu:B
4 2qmu:C 132 125 0.3385 0.3333 0.3520 1.70e-23 5jb3:8
5 1nee:A 135 125 0.2923 0.2815 0.3040 1.88e-23
6 7ase:n 225 140 0.3385 0.1956 0.3143 1.31e-14
7 8cas:m 147 112 0.2769 0.2449 0.3214 1.57e-12 6fyx:m, 6fyy:m, 8s8j:m, 6zu9:m
8 2e9h:A 157 97 0.2154 0.1783 0.2887 2.42e-10 8oz0:H, 8pj2:z, 8pj3:z
9 1k81:A 36 33 0.0769 0.2778 0.3030 0.094
10 7bhp:A 322 51 0.1462 0.0590 0.3725 1.6
11 6uss:A 485 35 0.1000 0.0268 0.3714 4.2 6uss:B
12 6m5x:O 334 66 0.1615 0.0629 0.3182 4.5 6m5x:R, 6m5x:P, 6m5x:Q
13 7pfo:B 759 53 0.1231 0.0211 0.3019 4.7 7plo:B, 5vbn:B, 5vbn:F
14 4c91:A 811 68 0.1538 0.0247 0.2941 4.8
15 4hca:A 99 38 0.0923 0.1212 0.3158 5.0 4hc7:B
16 3pmq:A 593 77 0.1462 0.0320 0.2468 7.1
17 2m9w:A 63 28 0.0769 0.1587 0.3571 7.6 8vg0:T, 8vg1:T
18 6mp8:A 308 35 0.0846 0.0357 0.3143 7.9
19 8gz2:B 1174 32 0.0923 0.0102 0.3750 8.0 8gz1:B
20 8fhd:A 1294 32 0.0923 0.0093 0.3750 8.2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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