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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
VFKKVLLTGTSEESFTAAADDAIDRAEDTLDNVVWAEVVDQGVAIGAVRTYQTEVQVAFELD

The query sequence (length=62) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2cc8:A 64 64 0.9839 0.9531 0.9531 1.17e-35 4b2h:A, 2ccb:A, 2cie:A, 2vkf:A, 2vx9:A
2 2vxa:A 66 64 0.4355 0.4091 0.4219 2.90e-08 2vxa:E, 2vxa:K, 2vxa:C, 2vxa:G, 2vxa:D, 2vxa:I, 2vxa:L, 2vxa:F, 2vxa:B, 2vxa:H, 2vxa:J
3 2cz8:D 68 64 0.4516 0.4118 0.4375 6.03e-05 2cz8:A, 2cz8:C, 2cz8:B, 2cz8:E, 2cz8:G, 2cz8:F, 2cz8:H, 2ux9:A, 2ux9:C, 2ux9:E, 2ux9:B, 2ux9:D, 2ux9:F, 2v18:A, 2v18:B, 2v18:H, 2v18:C, 2v18:F, 2v18:G, 2v18:J, 2v18:E, 2v18:D, 2v18:K, 2v18:I, 2v18:L, 2v19:A, 2v19:I, 2v19:E, 2v19:B, 2v19:F, 2v19:C, 2v19:K, 2v19:G, 2v19:D, 2v19:H, 2v19:J, 2v19:L, 2v21:A, 2v21:B, 2v21:C, 2v21:D, 2v21:F, 2vyx:A, 2vyx:B, 2vyx:L, 2vyx:G, 2vyx:H, 2vyx:C, 2vyx:F, 2vyx:E, 2vyx:J, 2vyx:D, 2vyx:I, 2vyx:K
4 2yiz:A 68 63 0.2903 0.2647 0.2857 0.021 2yiz:D, 2yiz:B, 2yiz:C, 2yj0:A, 2yj0:B, 2yj0:D, 2yj0:C, 2yj0:E, 2yj0:F
5 6r1e:A 70 56 0.2903 0.2571 0.3214 0.13 6r1e:C, 6r1e:D, 6r1e:B
6 5izd:A 494 30 0.1935 0.0243 0.4000 1.8 5izd:B, 5izd:C, 5izd:D, 5izd:G, 5izd:H
7 8aw0:A 320 33 0.1935 0.0375 0.3636 4.2 8avz:A, 8avz:C, 8avz:B, 8avz:D, 8aw0:F, 8aw0:B, 8aw0:D, 8aw0:C, 8aw0:H, 8aw0:E
8 5olu:A 310 32 0.1613 0.0323 0.3125 6.1
9 6c2h:A 345 50 0.2742 0.0493 0.3400 8.0 6c2q:A, 6c2z:A, 6c4p:A
10 7c3k:B 389 25 0.1452 0.0231 0.3600 8.4 7c3k:A, 8jqz:A, 8jqz:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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