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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
VEPNLHSLITSTTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPAHNLSDAFGEKFGKDARKVTGMNNLS
CMEIDPSAALKDMNDLADLTGSIPGIDEALSFMEVMKHIKRQTFDTVIFDTAPTGHTLRFLQLPNTLSKLLESGKLNELK
ANVETIRQQFTDPDLTTFVCVCISEFLSLYETERLIQELISYDMDVNSIIVNQLLFACKRCQARWKMQKKYLDQIDELYE
DFHVVKMPLCAGEIRGLNNLTKFSQFLNKEYNPITDGKVIYELE

The query sequence (length=284) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4xtr:B 311 308 0.9965 0.9100 0.9188 0.0 3b2e:A, 3b2e:D, 5bw8:B, 4pwx:A, 4pwx:B, 3vlc:A, 2woj:A, 2woj:B, 2woj:D, 4xtr:A, 4xvu:H, 4xvu:A, 4xvu:B, 4xvu:G, 4xwo:A, 4xwo:G, 4xwo:M, 4xwo:N, 4xwo:S, 4xwo:B, 4xwo:H, 4xwo:T, 3zs8:B, 3zs9:A, 3zs9:B
2 3sja:A 338 335 1.0000 0.8402 0.8478 0.0 3a36:B, 3a37:B, 3b2e:B, 3b2e:C, 3sja:E
3 3sjd:C 292 300 0.9648 0.9384 0.9133 0.0 3sjd:A, 3sjd:B, 2woj:C, 3zs8:A
4 3a36:A 314 321 0.9754 0.8822 0.8629 0.0 3a37:A, 5bwk:N
5 3idq:A 272 288 0.8944 0.9338 0.8819 9.52e-169
6 3ibg:A 300 301 0.5810 0.5500 0.5482 3.21e-106 3ibg:B, 3ibg:C, 3ibg:D, 3ibg:E, 3ibg:F
7 3io3:A 230 285 0.5810 0.7174 0.5789 3.10e-105
8 2woo:A 303 301 0.6021 0.5644 0.5681 8.03e-105 2woo:B, 2woo:C, 2woo:D, 2woo:E, 2woo:F
9 8odu:A 291 291 0.5634 0.5498 0.5498 9.91e-100
10 3iqx:A 261 279 0.5458 0.5939 0.5556 3.37e-95 3iqw:A, 3iqw:B, 3iqx:B
11 6so5:A 313 315 0.5246 0.4760 0.4730 1.91e-86 7ru9:A, 7ru9:B, 7rua:A, 7rua:B, 7ruc:A, 7ruc:B
12 7sq0:A 306 297 0.4965 0.4608 0.4747 7.25e-81 7sq0:B
13 7spz:A 328 320 0.5106 0.4421 0.4531 8.85e-77 7spy:A
14 8hac:B 327 325 0.5035 0.4373 0.4400 2.33e-74 8hac:A
15 3zq6:B 288 278 0.3838 0.3785 0.3921 1.89e-48 3zq6:C
16 3zq6:D 307 296 0.3768 0.3485 0.3615 2.59e-45 3zq6:A
17 3ug7:A 317 283 0.3134 0.2808 0.3145 1.22e-43 3ug6:A, 3ug6:B, 3ug6:C, 3ug6:D, 3ug7:B, 3ug7:C, 3ug7:D
18 1ii0:B 553 232 0.2711 0.1392 0.3319 1.38e-26 1f48:A, 1ihu:A, 1ii0:A, 1ii9:A, 1ii9:B
19 1ii0:B 553 284 0.2535 0.1302 0.2535 3.66e-06 1f48:A, 1ihu:A, 1ii0:A, 1ii9:A, 1ii9:B
20 5zme:A 638 288 0.2958 0.1317 0.2917 7.75e-25 5zmf:A
21 5zme:A 638 336 0.3204 0.1426 0.2708 1.61e-22 5zmf:A
22 6bs3:A 330 94 0.0915 0.0788 0.2766 2.43e-05 6bs4:A, 6bs5:A
23 8elf:B 384 195 0.1761 0.1302 0.2564 9.53e-05 8elf:A
24 2bej:A 245 113 0.0951 0.1102 0.2389 0.001 2bek:A, 2bek:B, 2bek:C, 2bek:D
25 8egk:B 355 73 0.0775 0.0620 0.3014 0.005
26 6bs3:B 355 171 0.1268 0.1014 0.2105 0.007 6bs4:B
27 6iub:A 264 42 0.0634 0.0682 0.4286 0.007 6iub:B, 6iuc:A, 6iuc:B, 6iuc:C, 6iuc:D, 6iud:B, 6iud:C, 6iud:D, 6iud:A, 8jmj:A, 8jmj:B, 8jmj:C, 8jmj:D, 8jmk:A, 8jmk:B, 8jmk:C, 8jmk:D, 8jml:A, 8jml:B
28 5if9:A 251 128 0.1408 0.1594 0.3125 0.008 5if9:B, 5ihp:A, 5ihp:B
29 2ynm:B 268 41 0.0634 0.0672 0.4390 0.030 2ynm:A
30 5tvk:B 242 83 0.0880 0.1033 0.3012 0.050 3k9g:A, 5tvk:A
31 3q9l:A 257 34 0.0599 0.0661 0.5000 0.062 3q9l:B, 3r9i:A, 3r9i:B, 3r9i:C, 3r9i:D, 3r9j:A, 3r9j:B
32 5k5z:D 314 41 0.0669 0.0605 0.4634 0.14 5k5z:A, 5u1j:B, 5u1j:A, 5u1j:C, 5u1j:D
33 3fwy:A 268 43 0.0634 0.0672 0.4186 0.15 3fwy:B, 6uyk:A, 6uyk:B, 6uyk:C, 6uyk:D
34 5u1g:D 211 96 0.1127 0.1517 0.3333 0.22 4dzz:A, 4dzz:B, 4e03:A, 4e03:B, 4e07:A, 4e07:B, 4e09:A, 5u1g:B, 5u1g:C, 5u1g:A
35 6riq:C 254 25 0.0458 0.0512 0.5200 0.40 6riq:D, 6riq:G, 6riq:J, 6riq:K, 6riq:M, 6riq:N, 6riq:Q, 6riq:R, 6riq:U, 6riq:V
36 4v02:A 244 36 0.0563 0.0656 0.4444 0.78 4v02:B, 4v03:A, 4v03:B
37 6t1f:C 195 118 0.1056 0.1538 0.2542 1.4 7bm8:A, 7bm8:B, 6s6h:A, 6t1f:A, 6t1f:B, 6t1f:D
38 6a20:A 395 210 0.1620 0.1165 0.2190 1.5 6a1z:A, 7d8v:A, 3gbj:B, 5zbr:B, 5zbr:A, 5zbr:C, 5zbs:B, 5zbs:A
39 2afh:E 289 34 0.0423 0.0415 0.3529 1.6 2afh:F, 2afi:E, 2afi:F, 2afi:G, 2afi:H, 2afi:M, 2afi:N, 2afi:O, 2afi:P, 2c8v:A, 1de0:A, 1de0:B, 8dfc:E, 8dfc:F, 8dfd:E, 8dfd:F, 8dfd:G, 8dfd:H, 1fp6:A, 1fp6:B, 1fp6:C, 1fp6:D, 1g1m:A, 1g1m:B, 1g20:E, 1g20:F, 1g20:G, 1g20:H, 1g21:E, 1g21:F, 1g21:G, 1g21:H, 1g5p:A, 1g5p:B, 1m1y:E, 1m1y:F, 1m1y:G, 1m1y:H, 1m1y:M, 1m1y:N, 1m1y:O, 1m1y:P, 1m34:E, 1m34:F, 1m34:G, 1m34:H, 1m34:M, 1m34:N, 1m34:O, 1m34:P, 1n2c:E, 1n2c:F, 1n2c:G, 1n2c:H, 6n4j:A, 6n4j:B, 6n4k:A, 6n4k:B, 6n4l:A, 6n4m:A, 1nip:B, 1nip:A, 2nip:A, 2nip:B, 6o0b:A, 6o0b:B, 6q93:A, 6q93:B, 6q93:C, 6q93:D, 6q93:E, 6q93:F, 6q93:G, 6q93:H, 1rw4:A, 7t4h:A, 8tc3:A, 8tc3:B, 7tne:A, 7tpn:A, 7tpo:A, 7tpv:A, 7tpw:A, 7tpx:A, 7tpy:A, 7tpz:A, 7tq0:A, 7tq9:A, 7tqc:A, 7tqe:A, 7tqf:A, 7tqh:A, 7tqi:A, 7tqj:A, 7tqk:A, 7ut8:E, 7ut8:F, 7ut9:E, 7ut9:F, 7uta:E, 7uta:F, 7uta:G, 7uta:H, 4wza:E, 4wza:F, 4wza:G, 4wza:H, 4wzb:E, 4wzb:F, 4wzb:G, 4wzb:H, 1xcp:A, 1xcp:B, 1xcp:C, 1xcp:D, 1xd8:A, 1xd8:B, 1xd9:A, 1xd9:B, 1xdb:A, 1xdb:B
40 8r9r:A 255 63 0.0704 0.0784 0.3175 1.8
41 1g3q:A 237 78 0.0775 0.0928 0.2821 1.9 1g3r:A
42 6nzj:A 273 40 0.0528 0.0549 0.3750 2.1 6nzj:B
43 7dut:A 220 118 0.1092 0.1409 0.2627 2.1 7dv3:A, 7dv3:B, 7dwr:A, 7dwr:D, 7dwr:B, 7dwr:C
44 3cwq:A 206 33 0.0528 0.0728 0.4545 3.1 3cwq:B
45 7qz2:B 132 58 0.0563 0.1212 0.2759 3.7 7qz2:A
46 3a43:A 139 64 0.0563 0.1151 0.2500 4.4 3a44:A, 3a44:B, 3a44:D, 5aun:A, 5auo:A, 5aup:A, 5aup:H, 5yxy:D, 5yxy:E, 5yxy:F, 5yy0:B
47 1ion:A 243 47 0.0599 0.0700 0.3617 4.6
48 1xpl:A 389 89 0.0986 0.0720 0.3146 4.9 1txt:A, 1txt:B, 1txt:C, 1txt:D, 1xpk:A, 1xpk:B, 1xpk:C, 1xpk:D, 1xpl:B, 1xpl:C, 1xpl:D, 1xpm:A, 1xpm:B, 1xpm:C, 1xpm:D
49 3ixe:B 70 24 0.0317 0.1286 0.3750 5.9
50 5b1s:A 294 34 0.0423 0.0408 0.3529 6.6 5b1s:B, 5b1s:C, 5b1s:D, 3bwc:A, 3bwc:B, 5y4p:A, 5y4p:B, 5y4p:C, 5y4p:D, 5y4q:A, 5y4q:B, 5y4q:C, 5y4q:D, 4yuv:A, 4yuv:B, 4yuw:A, 4yuw:B, 4yux:A, 4yux:B, 4yuy:A, 4yuy:B, 4yuz:A, 4yuz:B, 4yuz:C, 4yuz:D, 4yv0:A, 4yv0:B, 4yv0:C, 4yv0:D, 4yv1:A, 4yv1:B, 4yv1:C, 4yv1:D, 4yv2:A, 4yv2:B
51 6g2g:B 273 168 0.1303 0.1355 0.2202 6.6 6g2g:A
52 5e7p:A 719 28 0.0423 0.0167 0.4286 7.0 5e7p:B
53 3kjg:A 254 45 0.0599 0.0669 0.3778 7.3 3kjg:B, 3kjh:A, 3kji:A, 3kji:B
54 6s6h:B 140 54 0.0563 0.1143 0.2963 7.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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