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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
VEIRAIENGPYEVKIAIYLCRCGHSGSKPHCDGTHAKVGFKAPGAKIVHHHHHH

The query sequence (length=54) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3tbo:A 54 54 1.0000 1.0000 1.0000 3.54e-34
2 3tbm:A 61 59 0.4259 0.3770 0.3898 1.41e-07 3tbm:B
3 3tbn:A 87 38 0.2407 0.1494 0.3421 0.028
4 3tbn:A 87 18 0.1852 0.1149 0.5556 1.5
5 6z1p:AV 129 38 0.2778 0.1163 0.3947 0.064
6 7yvz:A 63 19 0.1852 0.1587 0.5263 0.076
7 3fnv:B 68 18 0.1852 0.1471 0.5556 0.13 3fnv:A, 4oo7:A, 4oo7:B, 4ooa:A, 4ooa:B, 4ooa:C, 4ooa:D, 4ooa:E, 4ooa:F, 7p0p:A, 7p0p:B, 7p0p:C, 7p0p:D
8 3ew0:A 77 22 0.2222 0.1558 0.5455 0.18 6de9:A, 3ew0:B, 4ezf:A, 4ezf:B, 4f1e:A, 4f1e:B, 4f1e:C, 4f1e:D, 4f1e:E, 4f1e:F, 4f1e:G, 4f1e:H, 4f1e:I, 4f1e:J, 4f1e:K, 4f1e:L, 4f1e:M, 4f1e:N, 4f1e:O, 4f1e:P, 4f1e:Q, 4f1e:R, 4f28:A, 4f28:B, 4f2c:A, 4f2c:B, 3lpq:A, 3lpq:B, 7p0o:A, 7p0o:B, 2qd0:A, 2qd0:B, 2qh7:A, 2qh7:B, 2r13:A, 3ree:A
9 3s2r:B 78 18 0.1852 0.1282 0.5556 0.32 3s2q:A, 3s2q:B, 3s2r:A
10 6pyu:A 930 28 0.2037 0.0118 0.3929 0.48 8bcy:A, 5dxu:A, 6ftn:A, 7jis:A, 5m6u:A, 6mum:A, 5ncy:A, 5ncz:A, 6ocu:A, 7oi4:AAA, 7oij:AAA, 7oil:AAA, 7ois:AAA, 8s3r:A, 5t2l:A, 5t8f:A, 5ubt:A, 2wxg:A, 2wxk:A
11 7lq1:A 950 28 0.2037 0.0116 0.3929 0.48 5ae8:A, 5ae9:A, 6eyz:A, 6ez6:A, 6g6w:A, 6hi1:A, 6hi2:A, 6hi9:A, 5l72:A, 7lm2:A, 6oco:A, 7pop:A, 7por:A, 7pos:A, 7pot:A, 6pyr:A, 6q6y:A, 6q73:A, 6q74:A, 6tnr:A, 6tns:A, 5vlr:A, 6zaa:A, 6zac:A, 6zad:A
12 2wxl:A 823 19 0.1667 0.0109 0.4737 0.52 6gy0:A, 5i4u:A, 5i6u:A, 6mul:A, 6mul:B, 6mum:B, 5ngb:A, 7r26:A, 5t27:A, 5t28:A, 5t2b:A, 5t2d:A, 5t2g:A, 5t2i:A, 5t2m:A, 5t7f:A, 5t7f:B, 5t8i:A, 2wxf:A, 2wxh:A, 2wxi:A, 2wxj:A, 2wxm:A, 2wxn:A, 2wxo:A, 2wxp:A, 2wxq:A, 2x38:A, 4xe0:A
13 4ajw:A 765 19 0.1667 0.0118 0.4737 0.53 4v0i:A
14 8b6h:EF 188 36 0.2037 0.0585 0.3056 1.1 8b6h:Ef, 8bqs:EF, 8bqs:Ef, 8gym:fs, 8gym:FS, 8gzu:0C, 8gzu:47, 8gzu:fs, 8gzu:FS, 7w5z:FS, 7w5z:fs
15 8pcx:A 232 34 0.2037 0.0474 0.3235 3.0 8bjo:A, 8bxz:A, 8p6o:A, 8pc3:A, 8pc8:A, 8pdt:A, 8ped:A, 8qli:A, 8r43:A, 8rbn:A
16 6avj:A 92 36 0.2222 0.1304 0.3333 5.3 6avj:B, 6avj:C
17 6avj:A 92 18 0.1481 0.0870 0.4444 5.4 6avj:B, 6avj:C
18 2oaa:B 248 38 0.2407 0.0524 0.3421 6.4 2oaa:A
19 3hzl:A 394 22 0.1481 0.0203 0.3636 8.4 2oln:A, 2olo:A, 2q6u:A
20 1qax:A 425 24 0.2037 0.0259 0.4583 8.7 8gdn:A, 8gdn:B, 4i4b:A, 4i4b:B, 4i56:A, 4i56:B, 4i6a:A, 4i6a:B, 4i6w:A, 4i6w:B, 4i6y:A, 4i6y:B, 1qax:B, 1qay:A, 1qay:B, 1r31:A, 1r31:B, 8sz6:A, 8sz6:B, 1t02:A, 8vlq:A, 8vlq:B
21 4ak2:A 286 32 0.2037 0.0385 0.3438 9.1

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417