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BioLiP
>protein
VECPVCGSEIEIGEVELHQIVECPVCGAELEVVSLEPLTLEELPEVEEDWGE

The query sequence (length=52) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5k2m:F 53 52 1.0000 0.9811 1.0000 2.13e-28 5k2m:E
2 5k2m:N 33 39 0.6346 1.0000 0.8462 3.65e-12
3 5ein:C 54 50 0.5577 0.5370 0.5800 5.76e-12 5eio:C, 3wwl:A, 3wwn:B
4 3vpb:E 56 54 0.4231 0.3929 0.4074 0.013 3vpb:F
5 2d74:B 137 28 0.2308 0.0876 0.4286 0.22 2dcu:B
6 8i4q:A 479 34 0.2500 0.0271 0.3824 0.45 8i4q:B
7 2ji6:A 559 42 0.2308 0.0215 0.2857 0.46 2c31:A, 2c31:B, 2ji6:B, 2ji7:A, 2ji7:B, 2ji8:A, 2ji8:B, 2ji9:A, 2ji9:B, 2jib:A, 2jib:B
8 6muu:A 780 19 0.2115 0.0141 0.5789 1.5 6iqw:A, 6mur:A, 6mus:A, 6mut:A, 6o7e:A, 6o7h:A
9 6ndn:A 406 49 0.3462 0.0443 0.3673 1.6 1c0n:A, 5db5:A, 5db5:B, 1i29:A, 1jf9:A, 1kmj:A, 1kmk:A, 6mr2:A, 6mr6:A, 6mre:A, 6mrh:A, 6mri:A, 6o10:A, 6o11:A, 6o12:A, 6o13:A, 7rrn:A, 7ruj:A, 7rw3:A, 6uy5:A, 6uy5:B
10 6o7i:A 741 19 0.2115 0.0148 0.5789 1.6
11 2owo:A 586 34 0.2500 0.0222 0.3824 1.6 4glx:A, 5tt5:A
12 1lv3:A 65 42 0.2308 0.1846 0.2857 3.3 4tma:I, 4tma:J, 4tma:L
13 1ez4:B 318 32 0.2115 0.0346 0.3438 3.4 1ez4:A, 1ez4:C, 1ez4:D
14 3a44:C 122 38 0.2500 0.1066 0.3421 3.6 3a43:B
15 2ppt:A 149 58 0.2885 0.1007 0.2586 4.7 2ppt:B
16 4rul:A 823 34 0.2885 0.0182 0.4412 5.9 1cy1:A, 1cy2:A, 1cy4:A, 1cy6:A, 1cy7:A, 1cy8:A, 1mw8:X, 3px7:A
17 3pyl:C 361 51 0.2692 0.0388 0.2745 7.4 2gz1:A, 2gz1:B, 2gz2:A, 2gz2:B, 2gz3:A, 2gz3:B, 2gz3:C, 2gz3:D, 3pwk:A, 3pwk:B, 3pws:A, 3pws:B, 3pyl:A, 3pyl:B, 3pyx:A, 3pyx:B, 3pzb:A, 3pzb:B, 3q11:A, 3q11:B, 3q1l:A, 3q1l:B, 3q1l:C, 3q1l:D, 4r3n:A, 4r3n:B, 4r3w:A, 4r3w:B, 4r41:A, 4r41:B, 4r4j:A, 4r4j:B, 4r51:A, 4r51:B, 4r54:A, 4r54:B, 4r5h:A, 4r5h:B
18 5y06:A 235 33 0.2308 0.0511 0.3636 9.9 5y05:A
19 5ywr:B 87 21 0.1346 0.0805 0.3333 10.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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