Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
VDVLLGADDGSLAFVPSEFSVPAGEKIVFKNNAGFPHNVLFDEDAVPSGVDVSKISMSEEDLLNAKGETFEVALSDKGEY
TFYCSPHQGAGMVGKVIVN

The query sequence (length=99) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4dp0:X 99 99 1.0000 1.0000 1.0000 3.14e-68 4dp1:X, 4dp2:X, 4dp4:X, 4dp5:X, 4dp6:X
2 1jxg:A 100 99 0.8687 0.8600 0.8687 1.43e-60 4dp7:X, 4dp8:X, 4dp9:X, 4dpa:X, 4dpb:X, 4dpc:X, 1jxg:B, 3pcy:A, 4pcy:A, 5pcy:A, 6pcy:A, 1plc:A, 1pnc:A, 1pnd:A, 1tkw:A
3 1ag6:A 99 99 0.7778 0.7778 0.7778 1.67e-54 1oow:A, 2pcf:A, 1tef:A, 1tef:B, 1teg:A, 1teg:B, 1ylb:B
4 9pcy:A 99 99 0.7677 0.7677 0.7677 7.20e-53
5 6yez:P 99 99 0.7576 0.7576 0.7576 6.99e-51 6zoo:P
6 1byo:A 99 98 0.7172 0.7172 0.7245 2.95e-49 1byo:B, 1byp:A
7 1pla:A 97 98 0.6364 0.6495 0.6429 5.44e-42 1plb:A
8 2plt:A 98 97 0.5859 0.5918 0.5979 7.36e-39 7zqe:M
9 1iuz:A 98 97 0.6061 0.6122 0.6186 5.82e-35
10 7pcy:A 98 97 0.5758 0.5816 0.5876 5.37e-34
11 1j5c:A 98 98 0.4343 0.4388 0.4388 4.94e-24 1j5d:A, 1jxd:A, 1jxf:A, 1pcs:A
12 1bxu:A 91 99 0.4242 0.4615 0.4242 5.25e-24 1bxv:A
13 4r0o:A 106 99 0.4141 0.3868 0.4141 3.16e-22 1baw:A, 1baw:B, 1baw:C, 3bqv:A, 3cvb:A, 3cvb:B, 3cvc:A, 3cvd:A, 3cvd:B, 3cvd:C, 2q5b:A, 2q5b:B, 2q5b:C, 4r0o:B, 4r0o:C, 4r0o:D, 2w88:A, 2w88:B, 2w88:C, 2w8c:A, 2w8c:B
14 2gim:A 106 100 0.4343 0.4057 0.4300 2.35e-21 2cj3:A, 2cj3:B, 1fa4:A, 2gim:C, 1nin:A, 1tu2:A
15 1b3i:A 97 98 0.3939 0.4021 0.3980 2.16e-18 2b3i:A, 2jxm:A
16 2bz7:A 102 100 0.3838 0.3725 0.3800 2.32e-16 2bzc:A, 1kdi:A, 1kdj:A
17 3tu6:A 127 100 0.3131 0.2441 0.3100 1.15e-07
18 3c75:A 106 88 0.2626 0.2453 0.2955 2.30e-07 3c75:B, 1id2:A, 1id2:B, 1id2:C
19 6akn:A 124 99 0.3131 0.2500 0.3131 3.27e-07 6akn:B, 1bqk:A, 1bqr:A, 8hm9:A, 8hm9:B, 6ifp:A, 6ifp:C, 2jkw:A, 2jkw:B, 2ux6:A, 2ux7:A, 2uxf:A, 2uxg:A, 5wv4:A, 5wv4:B, 5xmo:A, 5y23:A, 5y23:B, 4yl4:A, 5ysg:A, 5ysg:B, 5ysg:C, 5ysg:D, 5yw3:A, 5yw3:B, 5yw3:C, 5yw3:D, 5z0x:A, 5z0x:B, 1zia:A, 1zib:A, 5ztd:A, 5ztd:B
20 1aac:A 105 94 0.2525 0.2381 0.2660 1.71e-04 1aan:A, 1bxa:A, 2gb2:A, 2gba:A, 2gc4:C, 2gc4:G, 2gc4:K, 2gc4:O, 2idq:A, 2ids:A, 2idt:A, 2idu:A, 3ie9:A, 3iea:A, 2j55:A, 2j55:B, 2j56:A, 2j56:B, 2j57:A, 2j57:B, 2j57:C, 2j57:D, 3l45:A, 1mda:A, 1mda:B, 1mg2:C, 1mg2:G, 1mg2:K, 1mg2:O, 1mg3:C, 1mg3:G, 1mg3:K, 1mg3:O, 2mta:A, 2ov0:A, 4p5r:A, 4p5s:A, 3ply:A, 3ply:B, 3ply:C, 3ply:D, 2qdv:A, 2qdw:A, 2rac:A, 3rym:A, 3rym:C, 3rym:B, 3rym:D, 1sf3:A, 1sf5:A, 1sfd:A, 1sfd:B, 1sfh:A, 1sfh:B, 1t5k:A, 1t5k:B, 1t5k:C, 1t5k:D
21 1adw:A 123 98 0.2828 0.2276 0.2857 2.61e-04 1adw:B, 4bwt:A, 4bwt:B, 4bwu:A, 4bwu:B, 4bxv:A, 4bxv:B, 3erx:A, 3erx:B
22 5fc9:A 95 91 0.2626 0.2737 0.2857 3.08e-04 5fc9:B, 5fc9:C, 5fc9:D
23 1pmy:A 123 90 0.2727 0.2195 0.3000 6.04e-04
24 8k9n:A 125 102 0.2525 0.2000 0.2451 0.001 8k9p:A, 3nyk:A, 2p80:D, 1paz:A, 3paz:A, 4paz:A, 5paz:A, 6paz:A, 7paz:A, 8paz:A, 1py0:A, 1pza:A, 1pzb:A, 4rh4:A, 5x31:A, 5x31:B
25 6kol:A 125 116 0.3232 0.2560 0.2759 0.002 6l9s:A
26 5b1j:C 124 83 0.2626 0.2097 0.3133 0.003 3ef4:A, 3ef4:B, 3ef4:C
27 2dv6:A 422 70 0.2323 0.0545 0.3286 0.090 2dv6:B, 2dv6:C, 2dv6:D, 2dv6:E, 2dv6:F
28 2aan:A 123 123 0.3636 0.2927 0.2927 0.14
29 4hcf:B 96 87 0.2424 0.2500 0.2759 0.85 4hcf:A, 4hcg:A, 4hcg:B
30 2bt1:A 254 47 0.1616 0.0630 0.3404 1.1 2bsy:A, 2we0:A, 2we1:A, 2we2:A, 2we3:A
31 6tfo:C 424 71 0.2121 0.0495 0.2958 1.3 6tfd:A, 6tfd:C, 6tfd:B, 6tfo:A, 6tfo:B
32 2grj:A 179 42 0.1313 0.0726 0.3095 2.1 2grj:B, 2grj:C, 2grj:D, 2grj:E, 2grj:F, 2grj:G, 2grj:H
33 8ajz:B 167 92 0.2323 0.1377 0.2500 2.6 3bvd:B, 2cua:A, 2cua:B, 1ehk:B, 3eh3:B, 3eh4:B, 3eh5:B, 4fa7:B, 4faa:B, 2fwl:B, 4g70:B, 4g71:B, 4g72:B, 4g7q:B, 4g7r:B, 4g7s:B, 4gp4:B, 4gp5:B, 4gp8:B, 8hua:B, 8k65:B, 8k6y:B, 4n4y:B, 5ndc:B, 3qjq:B, 3qjr:B, 3qjs:B, 3qjt:B, 3qju:B, 3qjv:B, 2qpd:B, 2qpe:B, 3s33:B, 3s38:B, 3s39:B, 3s3a:B, 3s3b:B, 3s3c:B, 3s3d:B, 3s8f:B, 3s8g:B, 5u7n:A, 5u7n:B, 5u7n:C, 5u7n:D, 5u7n:E, 5u7n:F, 5u7n:G, 5u7n:H, 1xme:B
34 6hbe:C 427 83 0.2424 0.0562 0.2892 3.8 6hbe:A, 6hbe:B
35 6yxm:LLL 212 68 0.2121 0.0991 0.3088 8.2
36 2ww2:B 737 80 0.2323 0.0312 0.2875 9.1
37 7a3r:A 379 27 0.1010 0.0264 0.3704 9.2

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417