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BioLiP
>protein
VDLEKLAFGLTKLNEDDLVGVVQMVTDNKTPEMNVTNNVEEGEFIIDLYSLPEGLLKSLWDYVKKNT

The query sequence (length=67) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7uhe:C 74 67 1.0000 0.9054 1.0000 1.71e-43 8u77:A, 8u77:C, 8u77:E, 8u77:G, 7uhe:A
2 1a6e:B 502 64 0.2239 0.0299 0.2344 1.2
3 3m84:A 348 59 0.2537 0.0489 0.2881 1.4 3qty:A, 3qty:B
4 1wri:A 93 22 0.1642 0.1183 0.5000 1.6
5 4ii3:A 986 47 0.2388 0.0162 0.3404 1.9 9b5c:A, 9b5d:A, 9b5e:A, 9b5f:A, 9b5g:A, 9b5h:A, 9b5i:A, 9b5j:A, 9b5k:A, 9b5l:A, 9b5m:A, 9b5n:A, 9b5o:A, 9b5p:A, 9b5q:A, 9b5r:A, 9b5s:A, 9b5t:A, 9b5u:A, 9b5v:A, 9b5w:A, 9b5x:A, 4ii2:A, 4ii3:C, 6o82:A, 6o82:C, 6o83:A, 6o83:C, 5um6:A
6 6bff:A 178 31 0.1791 0.0674 0.3871 2.9 6bff:B, 6bfh:A
7 3wx7:A 402 29 0.1642 0.0274 0.3793 6.4 3wx7:B
8 5mqr:A 1082 60 0.2388 0.0148 0.2667 6.5 5mqs:A
9 7a1g:I 145 63 0.2836 0.1310 0.3016 8.3 7aju:DS, 7b7d:H, 8bn3:C8, 8bqd:H, 8bqx:H, 8c00:H, 8c01:H, 8cah:I, 8cas:J, 8cbj:S, 8ccs:u, 8cdl:u, 8cdr:u, 8ceh:u, 8cf5:u, 8cg8:u, 8cgn:u, 8civ:u, 8cku:u, 8cmj:u, 7d5s:ST, 5dat:C8, 5dat:c8, 5dc3:C8, 5dc3:c8, 5dge:C8, 5dge:c8, 5dgf:C8, 5dgf:c8, 5dgv:C8, 5dgv:c8, 6eml:H, 8eub:BS, 8evp:BS, 8evq:BS, 8evr:BS, 8evs:BS, 8evt:BS, 8ewb:BS, 8ewc:BS, 6fai:S, 5fci:C8, 5fci:c8, 5fcj:C8, 5fcj:c8, 6fyx:S, 6fyy:S, 6gq1:AI, 6gqb:AI, 6gqv:AI, 6gsm:S, 6gsn:S, 6hhq:T, 6hhq:c8, 5i4l:C8, 5i4l:c8, 6i7o:H, 6i7o:Hb, 8i7j:S, 5it7:S, 5it9:S, 3j6x:18, 3j6y:18, 3j77:18, 3j78:18, 3j80:S, 3j81:S, 3jam:S, 3jap:S, 5juo:PB, 5jup:PB, 5jus:PB, 5jut:PB, 5juu:PB, 8k2d:SS, 8k82:SS, 6ke6:ST, 6lqp:ST, 6lqu:ST, 5lyb:C8, 5lyb:c8, 5m1j:S2, 5mc6:H, 5mei:c8, 5mei:T, 7mpi:BS, 7mpj:BS, 7n8b:BS, 5ndg:C8, 5ndg:c8, 5ndv:C8, 5ndv:c8, 5ndw:C8, 5ndw:c8, 7nrc:SH, 7nrd:SH, 5obm:C8, 5obm:c8, 5on6:c8, 5on6:T, 7osa:uS13, 7osm:uS13, 6q8y:H, 6rbd:S, 6rbe:S, 7rr5:SS, 8rw1:S, 6s47:BT, 8s8d:S, 8s8e:S, 8s8f:S, 8s8g:S, 8s8h:S, 8s8i:S, 8s8j:S, 6snt:S, 7suk:L3, 6sv4:H, 6sv4:Hb, 6sv4:Hc, 6t4q:SS, 6t7i:SS, 6t7t:SS, 6t83:Sb, 6t83:t, 5tbw:T, 5tbw:c8, 6tb3:H, 5tga:C8, 5tga:c8, 5tgm:C8, 5tgm:c8, 6tnu:H, 4u3m:C8, 4u3m:c8, 4u3n:C8, 4u3n:c8, 4u3u:C8, 4u3u:c8, 4u4n:C8, 4u4n:c8, 4u4o:C8, 4u4o:c8, 4u4q:C8, 4u4q:c8, 4u4r:C8, 4u4r:c8, 4u4u:C8, 4u4u:c8, 4u4y:C8, 4u4y:c8, 4u4z:C8, 4u4z:c8, 4u50:C8, 4u50:c8, 4u51:C8, 4u51:c8, 4u52:C8, 4u52:c8, 4u53:C8, 4u53:c8, 4u55:C8, 4u55:c8, 4u56:C8, 4u56:c8, 4u6f:C8, 4u6f:c8, 4uer:M, 6uz7:S, 4v4b:AM, 4v6i:AM, 4v7h:AM, 4v7r:AL, 4v7r:CL, 4v88:AS, 4v88:CS, 4v8y:AS, 4v8z:AS, 4v92:BS, 6wdr:S, 6woo:SS, 6xiq:AI, 6xir:AI, 6y7c:S, 6z6j:SS, 6z6k:SS, 6zce:T, 7zpq:AS, 6zqd:DS, 6zqe:DS, 6zqf:DS, 6zqg:DS, 7zrs:AS, 6zu9:J, 7zuw:AS, 7zux:DS, 6zvi:A, 7zw0:sH
10 2ynp:A 601 48 0.2090 0.0233 0.2917 8.3 8ens:A, 8enw:A, 8enw:B, 8enx:A, 8hqt:A, 8hqv:A, 8hqx:A, 4j73:A, 4j77:A, 4j77:B, 4j78:A, 4j79:A, 4j81:B, 4j81:A, 4j82:A, 4j82:B, 4j84:A, 4j84:B, 4j86:A, 4j86:B, 2ynn:A
11 7yid:A 660 47 0.1791 0.0182 0.2553 9.9 7yid:B, 7yid:C, 7yid:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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