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BioLiP
>protein
VDGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCEL

The query sequence (length=39) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5vyg:B 43 39 1.0000 0.9070 1.0000 1.88e-23 5vyg:A, 5vyg:C
2 8eph:A 91 38 0.9744 0.4176 1.0000 1.37e-22 1edm:B, 1edm:C, 8eph:C
3 5ky2:B 40 37 0.6154 0.6000 0.6486 6.97e-13 5ky3:B
4 6r2w:L 143 37 0.6410 0.1748 0.6757 8.38e-12 2a2q:L, 2aei:L, 2aer:L, 2b8o:L, 2c4f:L, 8cn9:D, 8cn9:I, 8cn9:S, 1dan:L, 1dva:L, 1dva:M, 2ec9:L, 3ela:L, 1fak:L, 1ff7:A, 1ffm:A, 2fir:L, 4ibl:L, 1j9c:L, 5l0s:B, 5par:A, 2puq:L, 1qfk:L, 3th2:L, 3th3:L, 3th4:L, 1w0y:L, 1w2k:L, 1wqv:L, 1wss:L, 1wtg:L, 1wun:L, 1wv7:L, 4ylq:L, 1z6j:L, 4z6a:L, 4zma:L, 2zp0:L, 2zwl:L, 2zzu:L
5 5l0t:B 40 37 0.5641 0.5500 0.5946 1.68e-10 5ky7:B, 5l0u:B, 5l0v:B
6 1xkb:A 91 36 0.5897 0.2527 0.6389 5.49e-10 3k9x:A
7 7alj:A 115 39 0.5128 0.1739 0.5128 7.53e-10
8 7alj:A 115 36 0.4615 0.1565 0.5000 4.33e-06
9 7alj:A 115 33 0.3333 0.1130 0.3939 0.16
10 4d0f:A 125 39 0.4872 0.1520 0.4872 2.52e-08 4cud:A, 4cue:A, 4cuf:A, 4d0e:A, 5ub5:B, 2vj3:A, 4xlw:A
11 4d0f:A 125 39 0.4359 0.1360 0.4359 2.41e-06 4cud:A, 4cue:A, 4cuf:A, 4d0e:A, 5ub5:B, 2vj3:A, 4xlw:A
12 4d0f:A 125 40 0.4103 0.1280 0.4000 0.001 4cud:A, 4cue:A, 4cuf:A, 4d0e:A, 5ub5:B, 2vj3:A, 4xlw:A
13 4xbm:B 401 36 0.5897 0.0574 0.6389 3.30e-08
14 4xbm:B 401 39 0.4359 0.0424 0.4359 4.06e-04
15 4xbm:B 401 34 0.3590 0.0349 0.4118 0.29
16 4xbm:B 401 25 0.3077 0.0299 0.4800 0.62
17 5mwb:A 118 36 0.4359 0.1441 0.4722 4.60e-08
18 5mwb:A 118 39 0.4359 0.1441 0.4359 1.44e-05
19 5mwb:A 118 41 0.3846 0.1271 0.3659 0.054
20 4xlw:C 118 38 0.4615 0.1525 0.4737 2.79e-07 5ky8:B, 5l0r:B, 4xl1:A, 4xl1:D, 4xlw:E, 4xlw:G
21 4xlw:C 118 39 0.4359 0.1441 0.4359 8.03e-06 5ky8:B, 5l0r:B, 4xl1:A, 4xl1:D, 4xlw:E, 4xlw:G
22 4xlw:C 118 32 0.3333 0.1102 0.4062 0.002 5ky8:B, 5l0r:B, 4xl1:A, 4xl1:D, 4xlw:E, 4xlw:G
23 3h5c:B 312 34 0.5128 0.0641 0.5882 3.91e-07
24 4d90:A 127 36 0.4359 0.1339 0.4722 1.38e-05 4d90:B
25 4d90:A 127 40 0.4359 0.1339 0.4250 0.007 4d90:B
26 4d90:A 127 32 0.4103 0.1260 0.5000 0.031 4d90:B
27 5uk5:A 194 38 0.4359 0.0876 0.4474 6.45e-05 2rqz:A, 2rr2:A
28 5uk5:A 194 36 0.3846 0.0773 0.4167 0.002 2rqz:A, 2rr2:A
29 5uk5:A 194 40 0.4103 0.0825 0.4000 0.003 2rqz:A, 2rr2:A
30 5uk5:A 194 33 0.3333 0.0670 0.3939 0.31 2rqz:A, 2rr2:A
31 5uk5:A 194 36 0.3846 0.0773 0.4167 3.1 2rqz:A, 2rr2:A
32 5fm9:A 154 36 0.4615 0.1169 0.5000 1.18e-04 5fma:A, 5fma:B
33 5fm9:A 154 34 0.4103 0.1039 0.4706 5.43e-04 5fma:A, 5fma:B
34 5fm9:A 154 34 0.4103 0.1039 0.4706 0.003 5fma:A, 5fma:B
35 5fm9:A 154 39 0.3846 0.0974 0.3846 0.021 5fma:A, 5fma:B
36 4rs0:A 557 37 0.4103 0.0287 0.4324 0.001 6bl3:A, 6bl3:B, 6bl3:C, 6bl3:D, 6bl4:A, 6bl4:B, 6bl4:C, 6bl4:D, 4cox:A, 4cox:B, 4cox:C, 4cox:D, 5cox:A, 5cox:B, 5cox:C, 5cox:D, 6cox:A, 6cox:B, 1cvu:B, 1cvu:A, 1cx2:A, 1cx2:B, 1cx2:C, 1cx2:D, 1ddx:A, 1ddx:B, 1ddx:C, 1ddx:D, 4e1g:A, 4e1g:B, 8et0:A, 8et0:B, 5fdq:A, 5fdq:B, 4fm5:A, 4fm5:B, 4fm5:C, 4fm5:D, 3hs5:A, 3hs5:B, 3hs6:A, 3hs6:B, 3hs7:A, 3hs7:B, 5jvy:A, 5jvy:B, 5jvz:A, 5jvz:B, 5jw1:A, 5jw1:B, 3krk:A, 3krk:B, 3ln0:A, 3ln0:B, 3ln0:C, 3ln0:D, 3ln1:A, 3ln1:B, 3ln1:C, 3ln1:D, 4m10:A, 4m10:B, 4m10:C, 4m10:D, 4m11:A, 4m11:B, 4m11:C, 4m11:D, 3mdl:A, 3mdl:B, 3mqe:A, 3mqe:B, 3mqe:C, 3mqe:D, 3nt1:A, 3nt1:B, 3ntb:A, 3ntb:B, 3ntb:C, 3ntb:D, 3ntg:A, 3ntg:B, 3ntg:C, 3ntg:D, 6ofy:A, 6ofy:B, 3olt:A, 3olt:B, 3olu:A, 3olu:B, 4otj:A, 4otj:B, 4otj:C, 4otj:D, 4oty:A, 4oty:B, 3pgh:A, 3pgh:B, 3pgh:C, 3pgh:D, 4ph9:A, 4ph9:B, 1pxx:A, 1pxx:B, 1pxx:C, 1pxx:D, 3q7d:A, 3q7d:B, 3qh0:A, 3qh0:B, 3qmo:A, 3qmo:B, 3rr3:A, 3rr3:B, 3rr3:C, 3rr3:D, 4rrw:A, 4rrw:B, 4rrw:C, 4rrw:D, 4rrx:A, 4rrx:B, 4rrz:A, 4rrz:B, 4rrz:C, 4rrz:D, 4rut:A, 4rut:B, 4rut:C, 4rut:D, 3tzi:A, 3tzi:B, 6v3r:A, 6v3r:B, 6v3r:C, 6v3r:D, 5w58:A, 4z0l:A, 4z0l:B, 4z0l:C, 4z0l:D
37 3poy:A 1005 34 0.4359 0.0169 0.5000 0.002 3asi:A, 3b3q:E, 3b3q:F, 3biw:E, 3biw:F, 3biw:G, 3bod:A, 2h0b:A, 2h0b:B, 2h0b:C, 2h0b:D, 2r16:A, 2r1d:H, 2r1d:B, 2r1d:D, 2r1d:I, 3vkf:C, 3vkf:D, 2wqz:C, 2wqz:D, 2xb6:C, 2xb6:D, 5z8y:B, 5z8y:D, 5z8y:F, 5z8y:H
38 5uk5:B 308 30 0.3846 0.0487 0.5000 0.007 4cbz:A, 4cc0:A, 4cc0:B, 4cc1:A, 4cc1:B
39 5f1a:A 553 34 0.3846 0.0271 0.4412 0.014 5f19:A, 5f19:B, 5f1a:B, 5ikq:A, 5ikq:B, 5ikr:A, 5ikr:B, 5ikt:A, 5ikt:B, 5ikv:A, 5ikv:B, 5kir:A, 5kir:B
40 1emn:A 82 34 0.4615 0.2195 0.5294 0.019 1emo:A
41 1emn:A 82 32 0.3333 0.1585 0.4062 0.11 1emo:A
42 5ms9:A 177 33 0.3590 0.0791 0.4242 0.053
43 5ms9:A 177 33 0.4103 0.0904 0.4848 0.29
44 5ms9:A 177 27 0.3333 0.0734 0.4815 0.67
45 1lmj:A 86 34 0.3590 0.1628 0.4118 0.080
46 4c16:A 280 33 0.3590 0.0500 0.4242 0.10 4c16:B, 4csy:A, 4csy:B, 1esl:A, 6eyi:A, 6eyj:A, 6eyj:B, 6eyk:A, 1g1t:A
47 2w86:A 147 28 0.3590 0.0952 0.5000 0.22
48 8em4:A 3818 42 0.4103 0.0042 0.3810 0.29 8em4:B
49 8em4:A 3818 29 0.3333 0.0034 0.4483 3.1 8em4:B
50 8em7:A 4378 42 0.4103 0.0037 0.3810 0.33 8em7:B, 8jut:A, 8jut:B, 8juu:B, 8juu:A, 8jx8:B, 8jx8:A, 8jx9:B, 8jxa:A, 8jxb:A, 8jxd:A, 8jxe:A, 8jxe:B, 8jxf:B, 8jxg:A, 8jxh:A, 8jxi:B
51 8em7:A 4378 29 0.3333 0.0030 0.4483 3.3 8em7:B, 8jut:A, 8jut:B, 8juu:B, 8juu:A, 8jx8:B, 8jx8:A, 8jx9:B, 8jxa:A, 8jxb:A, 8jxd:A, 8jxe:A, 8jxe:B, 8jxf:B, 8jxg:A, 8jxh:A, 8jxi:B
52 2ygq:A 241 31 0.3590 0.0581 0.4516 0.38
53 2ygq:A 241 28 0.3333 0.0539 0.4643 1.6
54 2ygq:A 241 28 0.3333 0.0539 0.4643 5.4
55 1uzj:A 162 32 0.3333 0.0802 0.4062 0.44 1uzj:B, 1uzj:C, 1uzk:A
56 1urk:A 130 32 0.3590 0.1077 0.4375 0.44
57 6cxo:A 465 30 0.3333 0.0280 0.4333 0.65 6cxo:B
58 6pog:B 236 29 0.3590 0.0593 0.4828 0.80
59 3cfw:A 156 34 0.3077 0.0769 0.3529 0.97 5vc1:A
60 3v64:C 338 12 0.1795 0.0207 0.5833 1.2 3v64:D
61 7nyd:G 413 31 0.3333 0.0315 0.4194 1.3 8de6:A, 8de6:C, 8de6:G, 7nyc:H, 7nyd:H
62 6dlw:A 460 31 0.3333 0.0283 0.4194 1.4 6dlw:B, 6dlw:C, 6dlw:D, 6dlw:E, 6dlw:F, 6dlw:G, 6dlw:H, 6dlw:I, 6dlw:J, 6dlw:K, 6dlw:L, 6dlw:M, 6dlw:N, 6dlw:O, 6dlw:P, 6dlw:Q, 6dlw:R, 6dlw:S, 6dlw:T, 6dlw:U, 6dlw:V
63 6l6r:A 610 31 0.3590 0.0230 0.4516 1.6 6l6r:B, 7nam:A, 3sob:B, 3soq:A, 3sov:A
64 1g1q:A 160 34 0.3333 0.0813 0.3824 2.0 1g1q:B, 1g1q:C, 1g1q:D, 1g1r:A, 1g1r:B, 1g1r:D, 1g1r:C, 1g1s:B, 1g1s:A
65 6y6a:M 269 21 0.2308 0.0335 0.4286 3.6 6y6a:A, 6y6a:B, 6y6a:C, 6y6a:E, 6y6a:F, 6y6a:G, 6y6a:I, 6y6a:J, 6y6a:K, 6y6a:L, 6y6a:N, 6y6a:O, 6y6a:Q, 6y6a:R, 6y6a:S, 6y6a:T, 6y6a:V, 6y6a:X, 6y6a:Y, 6y6a:Z, 6y6a:a, 6y6a:b, 6y6a:c, 6y6a:d, 6y6a:e, 6y6a:f, 6y6a:j, 6y6a:n
66 1n7d:A 639 34 0.4103 0.0250 0.4706 3.7 1ajj:A, 3bps:E, 1d2j:A, 1f8z:A, 2fcw:B, 3gcw:E, 3gcx:E, 1hj7:A, 1hz8:A, 1i0u:A, 2kri:B, 2lgp:A, 3m0c:C, 3p5b:L, 3p5c:L, 1xfe:A
67 5gv3:B 163 20 0.2564 0.0613 0.5000 3.7 5gv3:A
68 2rhp:A 622 39 0.4359 0.0273 0.4359 4.4 1yo8:A
69 7pfp:A 563 37 0.3077 0.0213 0.3243 5.0 7pfp:C, 7q3n:U
70 2w2m:E 49 31 0.3846 0.3061 0.4839 5.0 2w2n:E, 2w2o:E, 2w2p:E, 2w2q:E
71 6ain:B 395 22 0.2564 0.0253 0.4545 5.3
72 8jxj:A 570 30 0.3077 0.0211 0.4000 6.2 8jxj:B
73 1z6c:A 87 42 0.3846 0.1724 0.3571 8.0
74 7she:A 541 46 0.4103 0.0296 0.3478 8.9 7she:B, 7shf:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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