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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
VDASRLFGESPDVVGIKKMLEKGKQWEAIQPYFDNVVREAKNFLEWSPNKRLANAVTVAAYLTSQGLILDMARTTELKVK
IKDDLVKMRYLLAYTVGKATGQSKYSLDAFHRILDPMLEVLMGSPKKENFEKFYDFLQAVVAYHKFFGGG

The query sequence (length=150) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6mur:B 162 162 1.0000 0.9259 0.9259 6.26e-105 6mus:B, 6o7e:B, 6o7h:B, 6o7i:B
2 6mus:J 121 123 0.7600 0.9421 0.9268 2.94e-79
3 6nud:A 108 34 0.0867 0.1204 0.3824 0.013 6nud:B
4 6ifk:D 121 32 0.0800 0.0992 0.3750 0.15 6ifk:C, 6ifl:B, 6ifl:C, 6ifr:D, 6ifr:C, 6ifu:B, 6ifu:C, 6ify:D, 6ify:C, 6ifz:D, 6ifz:C, 6ig0:D, 6ig0:C
5 7zc0:AAA 710 65 0.1533 0.0324 0.3538 0.68
6 6xn3:C 139 75 0.1267 0.1367 0.2533 1.3 9ash:D, 9asi:D, 9asi:E, 9asi:C, 6xn3:D, 6xn3:E, 6xn4:C, 6xn4:D, 6xn7:C, 6xn7:D, 6xn7:E
7 8rw1:j 267 35 0.0933 0.0524 0.4000 2.3 8cas:j, 6fyx:j, 6fyy:j, 6gsm:j, 6gsn:j, 3j81:j, 3jap:j, 8s8d:j, 8s8e:j, 8s8f:j, 8s8g:j, 8s8h:j, 8s8i:j, 8s8j:j
8 1kc7:A 872 47 0.0933 0.0161 0.2979 2.4
9 6t6f:A 288 71 0.1200 0.0625 0.2535 3.1 8bfm:A, 8bfs:A, 2jc6:A, 2jc6:C, 6t28:AAA, 6t29:AAA, 6t6f:B
10 6k31:A 1109 64 0.1267 0.0171 0.2969 4.2 6k31:B
11 7cpx:A 2262 47 0.1067 0.0071 0.3404 4.9 7cpx:B, 7cpy:A, 7cpy:B
12 4eb5:A 379 41 0.1000 0.0396 0.3659 6.0 4eb5:B, 4eb7:A, 4eb7:B, 4hvk:A, 4r5f:A
13 1af6:A 421 27 0.0667 0.0238 0.3704 6.2 1af6:B, 1af6:C, 1mpm:A, 1mpm:B, 1mpm:C, 1mpn:A, 1mpn:B, 1mpn:C, 1mpo:A, 1mpo:B, 1mpo:C, 1mpq:A, 1mpq:B, 1mpq:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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