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BioLiP
>protein
VDAEAVVQQKCISCHGGDLTGASAPAIDKAGANYSEEEILDIILNGQGGMPGGIAKGAEAEAVAAWLAEKK

The query sequence (length=71) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1b7v:A 71 71 1.0000 1.0000 1.0000 1.19e-45 1c75:A, 1k3g:A, 1k3h:A, 1n9c:A
2 6tp9:A 85 66 0.2817 0.2353 0.3030 0.008 6tp9:C, 6tp9:B, 6tp9:F, 6tp9:D, 6tp9:J, 6tp9:E, 6tp9:K, 6tp9:G, 6tp9:H, 6tp9:I
3 3a9f:A 78 68 0.2394 0.2179 0.2500 0.028 3a9f:B
4 7o38:A 81 81 0.3521 0.3086 0.3086 0.029
5 4gyd:A 86 75 0.3380 0.2791 0.3200 0.085 4gyd:B, 4gyd:C, 4gyd:D, 4gyd:E, 4gyd:F, 4h0j:A, 4h0j:B, 4h0j:C, 4h0j:D, 4h0j:E, 4h0j:F, 4h0k:A, 4h0k:B
6 2dge:A 102 54 0.2394 0.1667 0.3148 0.14 2ce0:A, 2ce1:A, 2dge:C, 2dge:B, 2dge:D, 2v07:A
7 6rtd:B 466 46 0.1831 0.0279 0.2826 0.42 6rtd:A, 6rte:A, 6rte:B
8 4v2k:A 235 21 0.1408 0.0426 0.4762 0.49 4wq7:A, 4wq8:A, 4wq9:A, 4wqa:A, 4wqb:A, 4wqc:A, 4wqd:A, 4wqe:A
9 3dr0:A 93 44 0.2394 0.1828 0.3864 0.56 3dr0:B, 3dr0:C, 4eic:A, 4eid:A
10 6xkw:p 254 70 0.3099 0.0866 0.3143 2.5 6xkx:p, 6xkz:p
11 4djd:D 323 30 0.1549 0.0341 0.3667 4.6 4djd:F
12 6hwh:i 162 16 0.0986 0.0432 0.4375 6.1 6hwh:j
13 1jda:A 418 29 0.1690 0.0287 0.4138 6.4 2amg:A, 1gcy:A, 6iwk:A, 6iyg:A, 6j3x:A, 1jdc:A, 1jdd:A, 6jqb:A, 1qi3:A, 1qi4:A, 1qi5:A, 1qpk:A
14 6adq:C 223 16 0.0986 0.0314 0.4375 6.5 6adq:O, 6hwh:M, 6hwh:K, 8ovc:O, 8ovc:C, 8ovd:O, 8ovd:C, 7rh5:O, 7rh5:I, 7rh6:O, 7rh6:I, 7rh7:O, 7rh7:I
15 3sky:A 261 34 0.1831 0.0498 0.3824 8.5
16 7o9u:A 153 53 0.1972 0.0915 0.2642 8.7
17 7am2:BK 694 22 0.1408 0.0144 0.4545 9.0
18 6p4f:C 436 13 0.1268 0.0206 0.6923 9.1 6p4f:A, 6p4w:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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