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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
VAGLTPCKDSKDFQRRLDGSVKKLKTRLAKYEKGTPPALALEKQIERTQARFERYGKAGLLCGTDGLPHLITDGRWSHSG
EFVIPGLFFLYIAGWIGWVGRSYVLFARESDKPTEKEIILDVPAALSFVSTGFIWPVSAFKEFTSGNLIADESEITVSPR

The query sequence (length=160) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7y7b:F 160 160 1.0000 1.0000 1.0000 1.19e-116 7y8a:F
2 8wm6:F 161 160 0.8438 0.8385 0.8438 2.68e-100 8wmj:F, 8wmv:F, 8wmw:F
3 7y5e:FN 158 158 0.7000 0.7089 0.7089 6.74e-83 7y5e:F2, 7y7a:F7, 7y7a:Fo
4 7dr0:F 161 160 0.6250 0.6211 0.6250 5.13e-75 7dr1:F, 7dr2:aF, 7dr2:bF, 7dr2:cF, 7dr2:dF
5 6l4u:F 161 160 0.5750 0.5714 0.5750 6.61e-71
6 8htu:F 161 160 0.6188 0.6149 0.6188 1.53e-68 7ksq:F, 7kux:F, 6l35:F, 7xqp:F
7 7blz:F 155 156 0.5563 0.5742 0.5705 3.81e-66 6fos:F, 5zgb:F, 5zgh:F
8 5l8r:F 154 152 0.5375 0.5584 0.5658 1.94e-62 7dkz:F, 4rku:F, 4y28:F, 6yac:F, 6yez:F, 6zoo:F, 6zxs:F
9 7wfe:BF 154 152 0.5437 0.5649 0.5724 3.04e-62 8j6z:F, 8j7a:F, 8j7b:F, 7wfd:AF, 7wg5:AF, 7wg5:BF, 8wgh:F
10 8bcv:F 158 155 0.5375 0.5443 0.5548 1.09e-61 7ew6:F, 7ewk:F, 7f9o:F, 7f9o:j
11 8wey:F 158 157 0.5000 0.5063 0.5096 1.32e-61
12 7yca:F 165 159 0.5625 0.5455 0.5660 3.28e-61
13 5zji:F 158 155 0.5437 0.5506 0.5613 3.60e-61
14 6igz:F 163 162 0.5500 0.5399 0.5432 4.00e-61
15 6ly5:f 162 149 0.5062 0.5000 0.5436 3.96e-59 3lw5:F, 2o01:F, 2wsc:F, 2wse:F, 2wsf:F, 4xk8:F, 4xk8:f
16 7a4p:F 165 164 0.5312 0.5152 0.5183 1.79e-57 6zzx:F, 6zzy:F
17 8cmo:F 165 164 0.5312 0.5152 0.5183 4.54e-57
18 7bgi:F 165 164 0.5062 0.4909 0.4939 2.71e-54 7blx:F, 7d0j:F, 7dz7:F, 7dz8:F, 8h2u:F, 6ijj:F, 6ijo:F, 6jo5:F, 6jo6:F, 7r3k:F, 7wyi:F, 7wzn:F, 7zq9:F, 7zqc:F, 7zqd:F, 7zqd:F2
19 6qph:F 163 162 0.5000 0.4908 0.4938 3.53e-54 6rhz:F, 6sl5:F, 6yxr:F
20 4fe1:F 141 160 0.5188 0.5887 0.5188 3.75e-52 7fix:F1, 7fix:F2, 7fix:F3, 1jb0:F, 6k33:bF, 6k33:aF, 6k33:cF, 7m75:F, 7m76:F, 7m78:F, 3pcq:F, 6pfy:Q, 6pfy:F, 6pfy:d, 6pgk:Q, 6pgk:F, 6pgk:d, 6tra:F, 6trc:F, 6trc:f, 6trc:6, 6trd:F, 6trd:f, 6trd:6, 5zf0:F1, 5zf0:F2, 5zf0:F3, 5zf0:F4, 5zf0:F6, 5zf0:F5
21 6kif:F 136 160 0.5062 0.5956 0.5062 9.96e-50 6kif:R, 6kif:j, 6kig:F, 6kig:R, 6kig:j
22 6vpv:F 141 160 0.4625 0.5248 0.4625 8.55e-45 6vpv:f, 6vpv:6
23 7qco:F 141 159 0.4500 0.5106 0.4528 1.35e-44 7qco:O, 7qco:o, 7qco:f
24 6jeo:bF 141 159 0.4625 0.5248 0.4654 1.65e-42 6jeo:aF, 6jeo:cF, 6jeo:dF, 6k61:F, 6k61:f, 6tcl:F1, 6tcl:F2, 6tcl:F, 6tcl:FF, 7y3f:F
25 6hqb:F 143 159 0.4313 0.4825 0.4340 1.39e-41 8am5:f, 8asl:f, 8asp:f, 4kt0:F, 6nwa:F, 6nwa:f, 6nwa:Q, 5oy0:F, 5oy0:f, 5oy0:6, 7umh:F, 7umh:Q, 7umh:f, 6uzv:F, 6uzv:6, 6uzv:f
26 8jze:f 184 153 0.3812 0.3315 0.3987 1.83e-33 8jzf:f
27 8jw0:f 185 156 0.3688 0.3189 0.3782 2.31e-31
28 7f4v:aF 151 155 0.4000 0.4238 0.4129 1.36e-30 7f4v:bF, 7f4v:cF
29 8jjr:f 169 153 0.3500 0.3314 0.3660 6.29e-30
30 4l6v:F 125 84 0.2750 0.3520 0.5238 5.99e-28 8am5:j, 8asl:j, 8asp:j, 6hqb:J, 4kt0:J, 4l6v:f, 4l6v:6, 6nwa:J, 6nwa:j, 6nwa:S, 5oy0:J, 5oy0:j, 5oy0:7, 7umh:J, 7umh:S, 7umh:j, 6uzv:J, 6uzv:j, 6uzv:7
31 7lx0:Q 135 101 0.2812 0.3333 0.4455 5.45e-25 7lx0:f, 7lx0:F, 6pnj:Q, 6pnj:f, 6pnj:F
32 7s3d:F 124 154 0.3312 0.4274 0.3442 9.47e-22 7s3d:Q, 7s3d:f
33 7dwq:F 103 123 0.3000 0.4660 0.3902 2.36e-18
34 8b0r:A 496 43 0.1000 0.0323 0.3721 9.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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