Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
TYTISIRVYQTTPKGFFRPVERTNWKYANGGTWDEVRGEYVLTMGGSGTSGSLRFVSSDTDESFVATFGVHNYKRWCDIV
TNLTNEQTALVINQEYYGVPIRDQARENQLTSYNVANAKGRRFAIEYTVTEGDNLKANLIIG

The query sequence (length=142) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1y2u:A 142 142 1.0000 1.0000 1.0000 3.84e-104 1y2u:B, 1y2v:A, 1y2v:B, 1y2w:A, 1y2w:B, 1y2x:A, 1y2x:B, 1y2x:C, 1y2x:D
2 2ofd:A 141 142 0.6549 0.6596 0.6549 5.01e-65 2ofd:B
3 3qdt:A 142 142 0.5704 0.5704 0.5704 2.46e-52 3qdt:B, 3qdx:A, 3qdx:B, 3qdy:A, 3qdy:B
4 4yla:A 374 48 0.1268 0.0481 0.3750 0.11
5 7e1q:A 366 75 0.1338 0.0519 0.2533 0.57 7e1r:A, 7e1r:C, 7e1s:C, 7e1s:A
6 7wss:A 533 106 0.1972 0.0525 0.2642 0.67 8jt1:A, 8jt1:B, 7wss:B, 7xeb:A, 7xeb:B
7 5agi:A 252 124 0.2113 0.1190 0.2419 1.4 5agj:A, 2wfg:A
8 4f30:A 521 32 0.0845 0.0230 0.3750 1.9 8doc:A, 4f2z:A, 4f2z:E, 4f3a:A, 4f3d:A, 4f3d:B, 3fsn:A, 3fsn:B, 7k88:B, 7k89:A, 7k89:B, 7k8g:B, 7l0e:A, 7l0e:B, 4rsc:A, 4rsc:B, 4rse:A, 4rse:B, 4ryx:A, 4ryy:A, 4ryy:B, 4ryz:A, 4ryz:B, 5ul5:A, 5ul5:B, 5ulg:A, 5ulg:B, 4zhk:A, 4zhk:B
9 5gvy:A 145 66 0.1268 0.1241 0.2727 2.0 5gvy:B, 5xfh:A
10 3mm5:B 363 17 0.0704 0.0275 0.5882 3.7 3mm5:E, 3mm6:B, 3mm6:E, 3mm7:B, 3mm7:E, 3mm8:B, 3mm8:E, 3mm9:B, 3mm9:E, 3mma:B, 3mma:E, 3mmb:B, 3mmb:E, 3mmc:B, 3mmc:E
11 4nzf:D 435 49 0.1127 0.0368 0.3265 6.1 4nzf:A, 4nzf:B, 4nzf:C, 4nzf:E, 4nzf:F, 4nzf:G, 4nzf:H
12 5gm6:Q 185 64 0.1408 0.1081 0.3125 6.6 5gmk:Q, 5wsg:Q, 5ylz:M
13 7dco:J 554 32 0.0845 0.0217 0.3750 8.7 5y88:I
14 7yiv:A 484 72 0.1479 0.0434 0.2917 8.7 7yiv:D, 7yiv:C, 7yiv:B, 7yiv:G, 7yiv:H, 7yiv:F, 7yiv:E, 7yiw:A, 7yiw:D, 7yiw:C, 7yiw:B, 7yiw:G, 7yiw:H, 7yiw:F, 7yiw:E, 7yix:A, 7yix:B
15 6gk5:A 403 50 0.0986 0.0347 0.2800 9.2 6gk6:A

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218