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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TYKLYIMTFQNAHFGSGTLDSSKLTFSADRIFSALVLEALKMGKLDAFLAEANQDKFTLTDAFPFQFGPFLPKPIGYPQF
LALENVDDYLNGELFENEEHAVIDTVTKNQPHKDDNLYQVATTRFSNDTSLYVIANESDLLNELMSSLQYSGLGGKRSSG
FGRFELDIQNIPLELSDRLTKNHSDKVMSLTTALPVDADLEEAMEDGHYLLTKSSGFAFSHATNENYRKQDLYKFASGST
FSKTFEGQIVDVRPLDFPHAVLNYAKPLFFKL

The query sequence (length=272) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6ifl:G 273 273 1.0000 0.9963 0.9963 0.0 6ifu:G
2 6ifn:B 297 296 1.0000 0.9158 0.9189 0.0 6ifk:B, 6ifr:B, 6ify:B, 6ifz:B, 6ig0:B, 6nud:I, 6nue:I
3 9ash:B 297 291 0.4191 0.3838 0.3918 3.69e-42 9asi:B, 6xn5:B
4 6xn7:B 277 277 0.4081 0.4007 0.4007 6.12e-42 6xn3:B, 6xn4:B
5 7v01:H 297 303 0.3640 0.3333 0.3267 1.33e-38 8do6:B, 7uzw:H, 7uzx:H, 7uzy:H, 7uzz:H, 7v00:H, 7v02:H
6 8wfx:M 296 305 0.3824 0.3514 0.3410 1.97e-36
7 6mur:E 286 145 0.1176 0.1119 0.2207 0.23 6iqw:E, 6mus:E, 6mut:E, 6muu:E, 6o7e:E, 6o7h:E, 6o7i:E
8 2j68:A 680 57 0.0772 0.0309 0.3684 1.2 2w6d:A, 2w6d:B
9 8hg5:Q 225 50 0.0625 0.0756 0.3400 1.4 7yca:Q
10 5om9:A 396 20 0.0368 0.0253 0.5000 4.4 3fju:A, 6i6z:A, 6i6z:B, 5om9:B, 4uee:A, 4uee:B, 4uez:A, 4uez:B, 2v77:A, 2v77:B
11 2p88:A 369 179 0.1324 0.0976 0.2011 4.7 2p88:B, 2p88:C, 2p88:D, 2p88:E, 2p88:F, 2p88:G, 2p88:H, 2p8b:A, 2p8c:A
12 3bdv:A 191 62 0.0772 0.1099 0.3387 6.8
13 5eke:C 307 62 0.0588 0.0521 0.2581 7.0 5eke:A, 5eke:B, 5eke:D, 5ekp:C, 5ekp:A, 5ekp:B, 5ekp:D
14 7rj1:A 265 65 0.0735 0.0755 0.3077 9.1 7rj1:B, 7rj1:C, 7rj1:D
15 3uxy:C 241 71 0.0699 0.0788 0.2676 9.7
16 3m6w:A 460 79 0.0882 0.0522 0.3038 9.8 3m6v:A, 3m6v:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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