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BioLiP
>protein
TVFEELKRYVGWGDGDERALRSLHGAAAPHFPRLAEEFYDRILGHEGARTALQVGHLKVTMIAWLDELLGGPWDEAYWDR
RYRIGRVHVRIGLPQHYMFGAMNVHRTGLARLAYERFHGDPPELERVRNALGKVLDLELAVMLHTYR

The query sequence (length=147) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5ohe:F 155 152 1.0000 0.9484 0.9671 9.83e-103 5ohe:A, 5ohe:B, 5ohe:C, 5ohe:D, 5ohe:E, 5ohe:G, 5ohe:H, 5ohf:A, 5ohf:B, 5ohf:C, 5ohf:D, 5ohf:E, 5ohf:F, 5ohf:G, 5ohf:H, 6otd:A
2 2w31:A 152 150 0.3605 0.3487 0.3533 1.09e-20 2w31:B
3 8h17:A 157 138 0.2925 0.2739 0.3116 4.27e-10
4 1or4:A 169 142 0.2721 0.2367 0.2817 1.59e-08 1or4:B, 1or6:A, 1or6:B
5 6m9a:C 157 71 0.1429 0.1338 0.2958 1.3 6i2z:A, 6i2z:B, 6m9a:A, 6m9a:B, 4uiq:A, 4uiq:B
6 6nrq:B 104 32 0.0680 0.0962 0.3125 1.5
7 8zfk:D 412 54 0.0884 0.0316 0.2407 2.0 8zfk:E, 8zfk:A, 8zfk:B, 8zfk:C
8 2j07:A 419 59 0.1497 0.0525 0.3729 3.1 1iqr:A, 1iqu:A, 2j08:A, 2j09:A
9 1rrv:A 401 24 0.0748 0.0274 0.4583 6.0 1rrv:B
10 7ui4:A 413 32 0.0884 0.0315 0.4062 6.4
11 3nio:A 316 84 0.1769 0.0823 0.3095 9.8 3nio:B, 3nio:C, 3nio:D, 3nio:E, 3nio:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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