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BioLiP
>protein
TTTKLTIFGLGAMGTAMATQFLKQGHTPTVWNRTAAKANPLVEQGAHLAATIPAAIAASPLLIFCLLDNAAVEQTLAAGP
PSLAGKTILNLTNGTPSQARRLATLASARGARYFHGGIMATPDMIGAPHAVILYSGGSVEGVLAVLGSGKYLGDDAGSAS
LHDLALLSGMYGLFAGFLHATALVRSESATEFLGLLAPWLQAMTGYLGLLARQIDDGVYTAQTSNLEMQLVALENACAAS
REQGVSAEVMLPLKGLVERAVREGRGGHDISSLIDYFRN

The query sequence (length=279) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6eoi:B 287 287 0.9964 0.9686 0.9686 0.0 6eod:A, 6eod:H, 6eod:B, 6eod:G, 6eod:C, 6eod:D, 6eoh:A, 6eoh:B, 6eoi:A, 6h7p:A, 6h7p:B, 5ojl:A
2 5g6r:B 289 283 0.6057 0.5848 0.5972 5.36e-116 5g6r:A, 5g6s:A, 5g6s:G, 5g6s:B, 5g6s:C, 5g6s:D, 5g6s:F, 5g6s:E, 5g6s:H
3 8qhe:A 284 283 0.5806 0.5704 0.5724 2.19e-109 6sle:A, 6sle:C, 6sle:H, 6sle:D, 6sle:E, 6sle:F, 6sle:G
4 8p2j:C 293 281 0.5556 0.5290 0.5516 9.34e-96 8ozv:A, 8ozw:A, 8ozw:B, 8p2j:A, 8p2j:B, 8p2j:D, 8p2j:E, 8p2j:F, 8p2j:G, 8p2j:H, 8p2j:I
5 6sle:B 261 275 0.5484 0.5862 0.5564 1.61e-91
6 7wnn:B 290 284 0.4946 0.4759 0.4859 3.80e-69 7wnn:A, 7wnw:B, 7wnw:A
7 8j43:A 285 281 0.4014 0.3930 0.3986 6.11e-59 8j43:B
8 7og3:A 290 286 0.4122 0.3966 0.4021 2.31e-56 7og3:B
9 8j44:A 293 284 0.4086 0.3891 0.4014 3.11e-56 8j44:B, 8whg:B, 8whg:E, 8whg:F
10 5a9t:A 286 283 0.4194 0.4091 0.4134 4.29e-56 5a9s:A, 5a9s:B, 5fwn:A, 5fwn:B
11 5ocm:A 290 285 0.4122 0.3966 0.4035 7.30e-56 5ocm:F, 5ocm:B, 5ocm:C, 5ocm:D, 5ocm:E
12 7osn:B 291 287 0.3978 0.3814 0.3868 1.02e-55 7osn:A, 7osn:C, 7osn:D, 7osn:E, 7osn:F
13 3zhb:D 294 286 0.4301 0.4082 0.4196 7.75e-55 3zhb:A, 3zhb:B, 3zhb:C
14 8hwy:A 287 289 0.4301 0.4181 0.4152 4.19e-52 8hwy:B, 8jku:A, 8jku:B
15 8jyt:C 286 282 0.4086 0.3986 0.4043 5.93e-48 8jyt:A, 8jyt:B, 8jyt:D
16 4d3f:B 289 282 0.3154 0.3045 0.3121 9.31e-43
17 8u05:B 290 286 0.3763 0.3621 0.3671 1.04e-41 8u05:A, 8u06:A, 8u06:B, 8u07:A, 8u07:B
18 6toe:B 293 289 0.3584 0.3413 0.3460 1.63e-40 6to4:A, 6to4:D, 6to4:B, 6to4:C, 6toe:A, 6toe:F, 6toe:C
19 8bk1:A 288 281 0.3297 0.3194 0.3274 1.03e-39 8bj5:A, 8bj5:B, 8bj5:C, 8bj5:D, 8bk1:B, 8bk1:C, 8bk1:D
20 6smt:B 289 287 0.3620 0.3495 0.3519 7.05e-39 6smt:A, 6smt:C, 6smt:D, 6smt:E
21 6jiz:C 295 295 0.3584 0.3390 0.3390 2.14e-37 6jit:B, 6jit:C, 6jiz:B
22 4oqy:A 268 281 0.3262 0.3396 0.3238 2.69e-36
23 8a3x:A 295 192 0.2832 0.2678 0.4115 1.57e-33 8a3x:B, 8a3x:C, 8a3x:D, 8a5z:A, 8a5z:B
24 7xr5:A 289 284 0.4229 0.4083 0.4155 4.60e-33 7xr5:B, 7xr5:C, 7xr5:D
25 7a3w:B 293 187 0.2581 0.2457 0.3850 9.32e-33 7a3w:A
26 7y8m:B 288 282 0.3047 0.2951 0.3014 2.61e-25 7y8l:A, 7y8l:B, 7y8l:C, 7y8l:D, 7y8m:A, 7y8m:C, 7y8m:D, 7y8n:A, 7y8n:B, 7y8o:A, 7y8o:B
27 2uyy:A 292 141 0.1470 0.1404 0.2908 2.04e-14 2uyy:D
28 3pef:A 287 118 0.1290 0.1254 0.3051 2.37e-11 3pef:B, 3pef:C, 3pef:D, 3pef:E, 3pef:F, 3pef:G, 3pef:H
29 3w6z:A 296 153 0.1756 0.1655 0.3203 7.11e-10 3w6u:A, 3ws7:A, 5xvh:A
30 3pdu:A 287 123 0.1290 0.1254 0.2927 9.16e-08 3pdu:B, 3pdu:C, 3pdu:D, 3pdu:F, 3pdu:E, 3pdu:G, 3pdu:H
31 2cvz:C 289 113 0.1398 0.1349 0.3451 3.23e-06 2cvz:A, 2cvz:B, 1wp4:A, 1wp4:B, 1wp4:C, 1wp4:D
32 5u5g:A 286 114 0.1219 0.1189 0.2982 5.10e-05 5u5g:B, 5u5g:C, 5u5g:D
33 6smz:C 295 65 0.0896 0.0847 0.3846 3.45e-04 6smy:A, 6smy:B, 6smy:C, 6smy:D, 6smz:A, 6smz:B, 6smz:D
34 6vpb:B 324 124 0.1183 0.1019 0.2661 0.012
35 8i4q:A 479 52 0.0573 0.0334 0.3077 0.016 8i4q:B
36 8c79:A 478 150 0.1577 0.0921 0.2933 0.056 8c79:B
37 7cb5:B 467 43 0.0466 0.0278 0.3023 0.15 7cb2:A, 7cb2:B, 7cb2:C, 7cb2:D, 7cb5:A, 7cb5:C, 7cb5:D
38 5t9f:B 253 63 0.0645 0.0711 0.2857 0.44 5t95:A, 5t95:B, 5t9e:A, 5t9e:B, 5t9f:A, 5whx:A, 5whx:B
39 3obb:A 295 115 0.1183 0.1119 0.2870 0.62 3q3c:A
40 2ofp:B 294 72 0.0824 0.0782 0.3194 0.81 2ofp:A, 1yjq:A, 1yon:A
41 3g8q:A 278 37 0.0394 0.0396 0.2973 0.93 3g8q:B, 3g8q:C, 3g8q:D
42 1n1e:A 349 58 0.0645 0.0516 0.3103 1.7 1evz:A, 1jdj:A, 1m66:A, 1m67:A, 1n1e:B, 1n1g:A
43 3hwr:A 299 105 0.0860 0.0803 0.2286 2.2 3hwr:B
44 8odw:A 612 32 0.0394 0.0180 0.3438 2.2 8odw:B
45 2hk9:A 269 57 0.0681 0.0706 0.3333 4.2 2hk9:B, 2hk9:C, 2hk9:D
46 7ezt:B 727 36 0.0466 0.0179 0.3611 5.4
47 1o6e:B 232 43 0.0645 0.0776 0.4186 5.8 1o6e:A
48 2iz1:B 471 38 0.0358 0.0212 0.2632 6.2 2iyo:A, 2iyp:A, 2iyp:B, 2iyp:C, 2iz0:A, 2iz0:B, 2iz0:C, 2iz1:A, 2iz1:C
49 8jat:A 204 42 0.0538 0.0735 0.3571 6.6
50 1qle:A 538 151 0.1219 0.0632 0.2252 7.4 1ar1:A, 7ate:A, 7atn:A, 7au3:A, 7au6:A, 3ehb:A, 3hb3:A
51 6xyu:A 537 89 0.1039 0.0540 0.3258 9.2 6xys:A, 6xyy:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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