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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
TTRLTEPQLRELAARGAAELDGATATDMLRWTDETFGDITTCNYVVASNMADAVLVDLAAKVRPGVPVIFLDTGYHFVET
IGTRDAIESVYDVRVLNVTPEHTVAEQDELLGKDLFARNPHECCRLRKVVPLGKTLRGYSAWVTGLRRVDAPTRANAPLV
SFDETFKLVKVNPLAAWTDQDVQEYIADNDVLVNPLVREGYPSIGCAPCTAKPA

The query sequence (length=214) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7lhr:A 214 214 0.9953 0.9953 0.9953 2.85e-156 7lhr:B, 7lhs:A, 7lhs:B, 7lhu:A, 7lhu:B
2 2goy:B 223 203 0.3411 0.3274 0.3596 4.94e-27 2goy:A, 2goy:C, 2goy:D, 2goy:E, 2goy:F, 2goy:G, 2goy:H
3 2oq2:C 257 198 0.2477 0.2062 0.2677 3.80e-14 2oq2:A, 2oq2:B, 2oq2:D
4 2byc:A 137 89 0.1308 0.2044 0.3146 0.026 2byc:B
5 1zun:A 204 174 0.1963 0.2059 0.2414 0.11
6 8rom:A 194 66 0.0888 0.0979 0.2879 0.43
7 8a25:A 289 47 0.0841 0.0623 0.3830 0.94 8a26:A
8 7v3x:V 437 68 0.0888 0.0435 0.2794 1.9 7v3x:U
9 1f47:B 144 57 0.0654 0.0972 0.2456 2.0 1s1j:A, 1s1s:B, 1y2f:A, 1y2g:A
10 8wfx:N 265 82 0.1075 0.0868 0.2805 2.7
11 5lqw:A 2130 75 0.1028 0.0103 0.2933 4.1
12 7eqx:C 299 88 0.1215 0.0870 0.2955 6.8 7eqx:D, 7eqz:A
13 7tei:B 1042 36 0.0561 0.0115 0.3333 7.1

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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