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BioLiP
>protein
TTFEFPDLTVEIKGPDVVGVNKLAEYEVHVKNLGGIGVPSTKVRVYINGTLYKNWTVSLGPKEEKVLTFNWTPTQEGMYR
INATVDEENTVVELNENNNVATFDVSVVLE

The query sequence (length=110) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3idu:A 116 107 0.9727 0.9224 1.0000 1.21e-73 3idu:B
2 3o01:A 283 74 0.1455 0.0565 0.2162 0.55 3o01:B, 3o02:A, 3o02:B
3 3zqe:B 248 74 0.1455 0.0645 0.2162 0.84
4 3zqe:A 272 74 0.1455 0.0588 0.2162 0.87 7agx:2F, 7agx:2K
5 2m9p:A 240 57 0.1455 0.0667 0.2807 1.0 2m9q:A
6 4g56:A 617 28 0.1000 0.0178 0.3929 1.7 4g56:C
7 5twj:C 157 52 0.1273 0.0892 0.2692 2.6 5twj:D, 5twj:A, 5twj:B, 5twk:C, 5twk:D, 5twk:A, 5twk:B
8 6d50:B 840 33 0.0909 0.0119 0.3030 3.1 6d50:A, 6nzg:A, 6nzg:B, 5uj6:A, 5uj6:B
9 7swl:E 480 31 0.1364 0.0312 0.4839 5.0
10 6o9n:A 613 56 0.1273 0.0228 0.2500 7.2 6o9n:B
11 2atv:A 168 30 0.1000 0.0655 0.3667 8.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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