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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TTELKRAFRPLTPHINELDALTILVNLTDKAKCKQKLRDEKWWASCINCVNYRQSHNPKFPDIRSEGVIRTQALGELPSF
LLSSSKIPPYHWSYSHDSKYVNKSAFLTNEISCLGKTCKAMAKQLADITLTTINVTLAPNYLTQISLPDSDTSYISLSPV
ASLSMQSHFHQRLQDENRHSAITRFSRTTNMGVTAMTCGGAFRMLKSGAKFSSPPHSFLVLPNIRVCGATALSSPVTVGI
PSLTAFFGFVHAFERNINRTTSSFRVESFAICVHQLHVEKRGLTAEFVETISAPATRDDWQCDVVFSLILNTNFIDQDTL
VTSLPKRLARGSAKIAIDDFKHINSFSTLETAIESLPIEAGRWLSLYAQSNNNLSDLLAAMTEDHQLMASCVGYHLLEEP
KDKPNSLRGYKHAIAECIIGLINSITFDPNTIFWSLKNYQNYLVVQPRSI

The query sequence (length=450) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6v9q:A 454 454 1.0000 0.9912 0.9912 0.0 6vbw:A
2 6pif:G 521 508 1.0000 0.8637 0.8858 0.0 6lnb:H, 6lnc:H, 6pig:G, 6pij:G
3 6uvn:B 498 503 0.9556 0.8635 0.8549 0.0 8fuk:G
4 7u5e:A 501 481 0.2578 0.2315 0.2412 1.13e-23
5 7u5d:A 630 285 0.1689 0.1206 0.2667 2.32e-12
6 7u5d:A 630 117 0.0778 0.0556 0.2991 1.17e-04
7 7jzw:B 306 65 0.0511 0.0752 0.3538 7.54e-07 6b44:B, 6b45:B, 6b47:B, 6b48:B, 7ecv:B, 7ecw:B, 7elm:B, 7elm:L, 7eln:B, 7eln:L, 7eqg:C, 7jzx:B, 7jzy:B, 7jzz:B, 6ne0:B, 7t3j:B, 7t3k:B, 7t3k:b, 7t3l:B, 7t3l:b, 7taw:B, 7taw:b, 7tax:B, 5uz9:B, 6vqv:D, 6vqw:C, 6vqx:C, 6w1x:B, 7we6:B, 7we6:L, 6whi:B, 7yhs:E
8 8yeo:A 255 251 0.1244 0.2196 0.2231 1.42e-05 8w1p:H, 8ydb:A, 8yh9:A
9 8k0k:B 248 34 0.0311 0.0565 0.4118 0.16 8k22:C, 8k23:C, 8k23:c, 8k24:c, 8k24:C, 8k27:B, 8k28:B, 8k29:B, 7wwv:B
10 6xux:A 879 90 0.0511 0.0262 0.2556 1.5
11 5gw7:B 760 90 0.0511 0.0303 0.2556 1.8 5ca3:A, 5ca3:B, 3d3i:A, 3d3i:B, 5gw7:A, 3w7s:A, 3w7s:B, 3w7t:A, 3w7t:B, 3w7u:A, 3w7u:B, 3w7w:A, 3w7w:B, 3w7x:A, 3w7x:B
12 8ijy:A 501 78 0.0467 0.0419 0.2692 6.3
13 2uvf:A 571 103 0.0756 0.0595 0.3301 6.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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