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BioLiP
>protein
TTCKEDFANKNYTIITSRCKGPNYPANVCCSAFKDFACPFAEVLNDEKNDCASTMFSYINLYGRYPPGIFANMCKEGKEG
LDCT

The query sequence (length=84) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6a5e:C 84 84 1.0000 1.0000 1.0000 1.25e-58 6a5e:D
2 6a5d:B 93 82 0.6905 0.6237 0.7073 7.47e-40 6a5d:A
3 6czs:A 312 63 0.2143 0.0577 0.2857 2.4 1nb3:A, 1nb3:B, 1nb3:C, 1nb3:D, 1nb5:A, 1nb5:B, 1nb5:C, 1nb5:D, 8pch:A
4 7yfr:A 691 47 0.1905 0.0232 0.3404 3.2 7yfr:C
5 4lcc:C 341 22 0.1310 0.0323 0.5000 3.5
6 5ah1:A 427 19 0.1190 0.0234 0.5263 3.8
7 5l5u:A 250 29 0.1548 0.0520 0.4483 5.7 5l5x:A, 5l60:A, 5l61:A, 5l62:A, 5l63:A, 5l64:A
8 5ixo:A 596 28 0.1429 0.0201 0.4286 7.4 5ixq:A, 5ixt:A, 5iyv:A, 5iyx:A
9 3pym:A 332 31 0.1786 0.0452 0.4839 7.5 3pym:B
10 7zm7:B 456 12 0.0952 0.0175 0.6667 8.5 7zmb:B, 7zmg:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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