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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
TSDPVRQYLHEIGQVPLLTLEEEIDLARKVEEGMEAIKKLSEATGLDQELIREVVRAKILGTARIQKIPGLKEKPDPKTV
EEVDGKLKSLPKELKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRFKFS
TYATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQLQQELGREPSYEEIAEAMGPGWDAKRVEETLKIAQEPVS
LETPIGDEKDSFYGDFIPDENLPSPVEAAAQSLLSEELEKALSKLSEREAMVLKLRKGLIDGREHTLEEVGAYFGVTRER
IRQIENKALRKLKYHESRTRKLRDFLE

The query sequence (length=347) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7rdq:F 349 347 0.9424 0.9370 0.9424 0.0 2a68:F, 2a68:P, 2a69:F, 2a69:P, 6cuu:F, 5d4c:F, 5d4c:P, 5d4d:F, 5d4d:P, 5d4e:F, 5d4e:P, 5e17:F, 5e18:F, 7eh0:F, 7eh1:F, 7eh2:F, 7eh2:P, 4g7h:F, 4g7h:P, 4g7o:F, 4g7o:P, 4g7z:F, 4g7z:P, 5i2d:F, 5i2d:Q, 1iw7:F, 1iw7:P, 4ki2:A, 4ki2:B, 6kqd:F, 6kqd:P, 6kqe:F, 6kqf:F, 6kqg:F, 6kqh:F, 6kql:F, 6kqm:F, 6kqn:F, 1ku7:A, 6l74:F, 6lts:F, 7mlb:F, 7mli:F, 7mlj:F, 3n97:A, 4oin:F, 4oio:F, 4oip:F, 4oiq:F, 4oir:F, 6ovr:F, 6ovy:F, 6ow3:F, 6oy5:F, 6oy6:F, 6oy7:F, 6p70:F, 6p71:F, 4q4z:F, 4q5s:F, 1rio:H, 1smy:F, 5tjg:F, 3ugo:A, 3ugp:A, 5vo8:F, 5voi:F, 8w8n:F, 8w8o:F, 8w8p:F, 6wox:F, 6woy:F, 5x21:F, 5x22:F, 5x22:P, 4xln:F, 4xln:L, 4xlp:F, 4xlp:L, 4xlq:F, 4xlq:L, 4xlr:F, 4xlr:L, 4xls:F, 4xls:L
2 6n60:F 318 349 0.5216 0.5692 0.5186 2.08e-110 8igr:L, 8igs:L
3 8k60:F 315 346 0.5014 0.5524 0.5029 5.97e-110 8dy7:F, 8dy9:F, 8hvr:F, 8jke:F, 7vpd:F, 7vpz:F, 7x74:F, 7x75:F, 7x76:F
4 7ckq:F 272 243 0.4813 0.6140 0.6872 6.02e-110 7f75:F, 8x6f:E
5 7ckq:F 272 43 0.0720 0.0919 0.5814 5.98e-05 7f75:F, 8x6f:E
6 6bzo:F 326 346 0.4986 0.5307 0.5000 3.22e-109 6c04:F, 6cce:F, 6ccv:F, 6dcf:F, 6edt:F, 6ee8:F, 6eec:F, 6fbv:F, 8hih:F, 7kif:F, 7kim:F, 7kin:F, 6m7j:F, 6ono:B, 6ono:D, 6onu:B, 6onu:D, 6onu:F, 6onu:H, 7p5x:AF, 5tw1:F, 7u22:F, 5uh5:F, 5uh6:F, 5uh8:F, 5uh9:F, 5uha:F, 5uhb:F, 5uhc:F, 5uhd:F, 5uhe:F, 5uhf:F, 5uhg:F, 5vi5:F, 5vi8:F, 6vvs:F, 6vvt:F, 6vvv:F, 6vvx:F, 6vvy:F, 6vvz:F, 6vw0:F
7 7l7b:F 272 255 0.5072 0.6471 0.6902 1.52e-104
8 7l7b:F 272 44 0.0663 0.0846 0.5227 3.77e-05
9 7ye1:F 497 246 0.4553 0.3179 0.6423 1.87e-103 7ye2:F, 5yix:A
10 7ye1:F 497 66 0.0865 0.0604 0.4545 2.30e-04 7ye2:F, 5yix:A
11 8u3b:F 431 272 0.4553 0.3666 0.5809 7.05e-99
12 8u3b:F 431 38 0.0548 0.0441 0.5000 1.15e-05
13 3iyd:F 479 271 0.4582 0.3319 0.5867 8.10e-99
14 6psr:L 548 272 0.4553 0.2883 0.5809 1.47e-97 6n58:L, 6n61:F
15 6psr:L 548 38 0.0548 0.0347 0.5000 1.37e-05 6n58:L, 6n61:F
16 8h3v:G 314 346 0.4928 0.5446 0.4942 6.47e-96 8h40:G
17 4kn7:X 517 268 0.4496 0.3017 0.5821 7.87e-96
18 4kn7:X 517 37 0.0519 0.0348 0.4865 5.67e-05
19 6wmr:Z 470 241 0.4179 0.3085 0.6017 5.46e-92 6wmt:Z
20 6wmr:Z 470 33 0.0490 0.0362 0.5152 0.005 6wmt:Z
21 8gzg:F 314 346 0.4813 0.5318 0.4827 2.76e-90 8gzh:F
22 6n4c:F 558 273 0.4409 0.2742 0.5604 4.85e-86 8ad1:F, 6b6h:F, 7bef:F, 7beg:F, 7c17:F, 7c97:F, 6ca0:F, 7chw:F, 7dy6:F, 8ftd:L, 6jnx:F, 8jo2:F, 6k4y:F, 7khb:F, 7khc:F, 7khe:F, 7khi:F, 6ldi:F, 7mkd:L, 7mke:L, 7mki:L, 7mkj:L, 7n4e:F, 6n57:L, 6n62:F, 6oul:L, 6p18:F, 2p7v:B, 6pb4:F, 6pb5:F, 6pb6:F, 6psq:L, 6pss:L, 6pst:L, 6psu:L, 6psv:L, 6psw:L, 7szj:F, 8to1:L, 8to6:L, 8to8:L, 8toe:L, 8tom:L, 5vt0:L, 7vwy:F, 7vwz:F, 7w5w:F, 7w5x:F, 7w5y:F, 6wmu:F, 6xh7:F, 6xh8:F, 6xl5:F, 6xl9:F, 6xlj:F, 6xll:F, 8y6u:F, 4yln:F, 4yln:L, 4yln:R, 4ylo:F, 4ylo:L, 4ylo:R, 4ylp:F, 4ylp:L, 4ylp:R
23 6n4c:F 558 38 0.0548 0.0341 0.5000 1.30e-05 8ad1:F, 6b6h:F, 7bef:F, 7beg:F, 7c17:F, 7c97:F, 6ca0:F, 7chw:F, 7dy6:F, 8ftd:L, 6jnx:F, 8jo2:F, 6k4y:F, 7khb:F, 7khc:F, 7khe:F, 7khi:F, 6ldi:F, 7mkd:L, 7mke:L, 7mki:L, 7mkj:L, 7n4e:F, 6n57:L, 6n62:F, 6oul:L, 6p18:F, 2p7v:B, 6pb4:F, 6pb5:F, 6pb6:F, 6psq:L, 6pss:L, 6pst:L, 6psu:L, 6psv:L, 6psw:L, 7szj:F, 8to1:L, 8to6:L, 8to8:L, 8toe:L, 8tom:L, 5vt0:L, 7vwy:F, 7vwz:F, 7w5w:F, 7w5x:F, 7w5y:F, 6wmu:F, 6xh7:F, 6xh8:F, 6xl5:F, 6xl9:F, 6xlj:F, 6xll:F, 8y6u:F, 4yln:F, 4yln:L, 4yln:R, 4ylo:F, 4ylo:L, 4ylo:R, 4ylp:F, 4ylp:L, 4ylp:R
24 7f0r:F 278 245 0.3228 0.4029 0.4571 5.71e-64
25 6omf:F 278 228 0.3084 0.3849 0.4693 4.82e-63 5ipl:F, 5ipm:F, 5ipn:F, 6kj6:F, 6utv:FFF, 6utw:FFF, 6utx:FFF, 6uty:FFF, 6utz:FFF, 6uu0:FFF, 6uu1:FFF, 6uu2:FFF, 6uu3:FFF, 6uu4:FFF, 6uu5:FFF, 6uu6:FFF, 6uu7:FFF, 6uu8:FFF, 6uu9:FFF, 6uua:FFF, 6uub:FFF, 6uuc:FFF
26 7xya:F 302 92 0.1816 0.2086 0.6848 3.76e-35
27 7xya:F 302 34 0.0548 0.0629 0.5588 2.40e-05
28 7ubm:F 353 152 0.2104 0.2068 0.4803 4.71e-35 7ubn:F
29 7ubm:F 353 48 0.0865 0.0850 0.6250 2.64e-09 7ubn:F
30 7ubm:F 353 38 0.0548 0.0538 0.5000 5.84e-06 7ubn:F
31 8hkc:E 262 239 0.2190 0.2901 0.3180 1.58e-22
32 8cwr:B 109 76 0.1210 0.3853 0.5526 8.45e-20 8cwt:B, 8cwt:D, 8cwt:F, 8cyf:B, 7kuf:B
33 6pmi:F 239 204 0.1643 0.2385 0.2794 4.39e-12 6pmj:F
34 8x6g:H 244 260 0.1700 0.2418 0.2269 2.67e-10
35 6pfv:G 223 203 0.1758 0.2735 0.3005 3.95e-10 6pfj:A, 6pfv:A, 6pfv:D
36 6ido:A 86 54 0.0692 0.2791 0.4444 3.99e-05 6ido:B
37 6klc:A 1436 104 0.0951 0.0230 0.3173 0.44
38 5or5:A 95 56 0.0519 0.1895 0.3214 0.59
39 7zm7:E 353 78 0.0576 0.0567 0.2564 1.4 7zmb:E, 7zmg:E
40 8thc:A 479 49 0.0605 0.0438 0.4286 1.8 8thb:A, 8thd:A
41 4c4o:B 335 56 0.0490 0.0507 0.3036 2.0 4c4o:A, 4c4o:C, 4c4o:D, 3wle:A, 3wle:B, 3wle:C, 3wle:D, 3wlf:A, 3wlf:B, 3wlf:C, 3wlf:D, 3wnq:A, 3wnq:B, 3wnq:C, 3wnq:D
42 7lq4:A 192 62 0.0663 0.1198 0.3710 2.0
43 7tm9:A 441 77 0.0692 0.0544 0.3117 3.2 7tm9:B, 7tm9:C, 7tm9:D, 7tm9:E, 7tm9:F, 7tm9:G, 7tm9:H
44 7ela:A 1402 104 0.0980 0.0243 0.3269 4.3
45 7x2y:A 342 45 0.0375 0.0380 0.2889 5.2 7x1x:A, 7x1x:B, 7x2y:B
46 5vjv:A 298 108 0.0720 0.0839 0.2315 6.9 5vjw:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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