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BioLiP
>protein
TRKMWSVQESEWLKQGVVRYGVGHWERIRSAFPFAGRTAVNLKDRWRTMVKLKM

The query sequence (length=54) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7c4p:A 55 54 1.0000 0.9818 1.0000 3.61e-35 7c4p:B, 7c4q:A, 7c4q:B, 7c4r:A, 7c4r:B
2 1vfc:A 63 53 0.5370 0.4603 0.5472 4.53e-17 3sjm:A, 3sjm:B, 1w0u:A, 1w0u:B
3 8ox1:M 65 53 0.4815 0.4000 0.4906 7.72e-12 1iv6:A, 8ox1:L, 1w0t:A, 1w0t:B
4 2qhb:A 86 51 0.4074 0.2558 0.4314 4.48e-05 2qhb:B
5 7tn2:W 895 34 0.2963 0.0179 0.4706 0.007 9gd2:W, 9gd3:W
6 9gd1:W 849 34 0.2963 0.0188 0.4706 0.007
7 6ftx:W 878 34 0.2963 0.0182 0.4706 0.009 6g0l:W, 5j70:A, 5j70:B, 3mwy:W, 3ted:A
8 6g0l:M 855 34 0.2963 0.0187 0.4706 0.009 7nkx:W, 5o9g:W
9 3osg:A 110 45 0.3148 0.1545 0.3778 0.011 3osf:A, 3osf:D, 3osg:D
10 8ity:4 365 42 0.2778 0.0411 0.3571 0.013 8iue:4, 8iuh:4
11 8ity:4 365 32 0.2222 0.0329 0.3750 0.049 8iue:4, 8iuh:4
12 7xur:A 307 42 0.2778 0.0489 0.3571 0.016
13 7xur:A 307 32 0.2222 0.0391 0.3750 0.064
14 8ro2:L 555 43 0.2963 0.0288 0.3721 0.071 7abi:L
15 5z56:L 342 43 0.2963 0.0468 0.3721 0.083 5z57:L, 5z58:L
16 8i0w:L 419 43 0.2963 0.0382 0.3721 0.093 5yzg:L
17 6id0:L 475 43 0.2963 0.0337 0.3721 0.094 6id1:L
18 9fmd:L 555 43 0.2963 0.0288 0.3721 0.10 8c6j:O, 7dvq:L, 6ff4:L, 8i0p:L, 8i0r:L, 6zym:L
19 6icz:L 454 43 0.2963 0.0352 0.3721 0.11 5xjc:L
20 8ro1:L 623 43 0.2778 0.0241 0.3488 0.14 8ro0:L
21 8i0u:L 387 43 0.2963 0.0413 0.3721 0.14 8i0v:L
22 8i0s:L 169 43 0.2963 0.0947 0.3721 0.14
23 8ch6:P 330 43 0.2963 0.0485 0.3721 0.14 8i0t:L, 7qtt:P
24 6qdv:O 441 43 0.2963 0.0363 0.3721 0.15 7w59:L, 7w5a:L, 7w5b:L
25 1h88:C 152 50 0.2778 0.0987 0.3000 0.23 1h89:C, 1h8a:C, 1mse:C, 1msf:C
26 6kks:A 106 38 0.2222 0.1132 0.3158 0.26
27 5mqf:L 336 43 0.2963 0.0476 0.3721 0.38
28 3jb9:W 426 42 0.2963 0.0376 0.3810 0.60
29 7dco:L 435 51 0.2593 0.0322 0.2745 0.66
30 6j6g:c 436 51 0.2593 0.0321 0.2745 0.85 6j6h:c, 6j6n:c, 6j6q:c, 5y88:J, 5ylz:J
31 1rcq:A 357 33 0.2222 0.0336 0.3636 1.3
32 6exn:O 320 51 0.2593 0.0437 0.2745 1.5 6bk8:S
33 4ymg:B 239 25 0.1852 0.0418 0.4000 1.6 4ymg:A, 4ymh:A, 4ymh:B, 4ymh:C, 4ymh:D
34 5lj5:O 283 51 0.2593 0.0495 0.2745 2.6
35 7edz:B 306 18 0.2037 0.0359 0.6111 3.2 7edz:D, 7edz:C, 7edz:A
36 7f4l:B 130 36 0.1852 0.0769 0.2778 3.2 7f4m:B, 7f4n:B
37 5gm6:c 415 51 0.2593 0.0337 0.2745 3.8
38 5gmk:c 436 51 0.2593 0.0321 0.2745 4.2 5lj3:O, 5mps:O, 5mq0:O, 5wsg:c
39 7b9v:O 280 51 0.2593 0.0500 0.2745 4.3
40 3zpc:A 357 30 0.1852 0.0280 0.3333 4.8 3zpc:B, 3zpg:A
41 3nks:A 465 21 0.1481 0.0172 0.3810 4.9 4ivm:B, 4ivo:B
42 3b8t:A 359 39 0.1667 0.0251 0.2308 6.4 3b8t:B, 3b8t:C, 3b8t:D, 3b8u:A, 3b8u:B, 3b8u:C, 3b8u:D, 3b8v:A, 3b8v:B, 3b8v:C, 3b8v:D, 3b8w:A, 3b8w:B, 3b8w:C, 3b8w:D, 2rjg:A, 2rjg:B, 2rjg:C, 2rjg:D, 2rjh:A, 2rjh:B, 2rjh:C, 2rjh:D, 4wr3:A, 4wr3:B, 4wr3:C, 4wr3:D, 4xbj:A, 4xbj:B, 4xbj:C, 4xbj:D
43 6gsz:A 863 17 0.1481 0.0093 0.4706 6.4
44 8pzk:A 300 11 0.1481 0.0267 0.7273 7.3
45 5nja:D 444 41 0.2593 0.0315 0.3415 7.4 5nja:B
46 6zj3:LZ 217 25 0.2593 0.0645 0.5600 7.5
47 1rzu:B 478 26 0.1481 0.0167 0.3077 8.7 1rzu:A
48 4ufc:B 788 25 0.1667 0.0114 0.3600 9.8 4ufc:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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