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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
TREARISRAKRAFVSTPSVRKILSYMDRCRDLSDLESEPTCMMVYGASGVGKTTVIKKYLNQAAAAAAAGGDIIPVLHIE
LPDNAKPVDAARELLVEMGDPLALYETDLARLTKRLTELIPAVGVKLIIIDEFQHLVEERSNRVLTQVGNWLKMILNKTK
CPIVIFGMPYSKVVLQANSQLHGRFSIQVELRPFSYQGGRGVFKTFLEYLDKALPFEKQAGLANESLQKKLYAFSQGNMR
SLRNLIYQASIEAIDNQHETITEEDFVFASKLTSGDKPNSWKNPFEEGVEVTEDMLRPPPKDIGWEDYLRH

The query sequence (length=311) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7rzy:1 311 311 0.9775 0.9775 0.9775 0.0 7rzy:2, 7rzy:7, 7rzy:3, 7rzy:4, 7rzy:5, 7rzy:6, 7ufi:1, 7ufi:7, 7ufi:2, 7ufi:3, 7ufi:4, 7ufi:5, 7ufi:6, 7ufm:D, 7ufm:I, 7ufm:A, 7ufm:B, 7ufm:C, 7ufm:E, 7ufm:F, 7ufm:G, 7ufm:H, 7ufm:J, 7ufm:K, 7ufm:L, 7ufm:M, 7ufm:N
2 8glw:A 483 243 0.1640 0.1056 0.2099 0.003 8glu:G, 8glu:F, 8glu:E, 8glw:E, 8glw:F, 8glw:B, 8glw:C, 8glw:D, 8glw:G, 8glx:F, 8glx:B, 8glx:G, 8glx:E, 8glx:C, 8glx:A, 7mbw:A, 7mbw:B, 7mbw:C, 7mbw:D, 7mcs:A, 7mcs:D, 7mcs:B, 7mcs:C, 7mcs:E, 7mcs:F, 8vcj:B, 8vcj:F, 8vcj:C, 8vcj:A, 8vcj:D, 8vcj:E, 8vcj:G, 8vct:C, 8vct:B, 8vct:G, 8vct:E, 8vct:F, 8vct:A
3 8bd4:F 260 255 0.1608 0.1923 0.1961 0.003 8bd4:G, 8bd4:A, 8bd4:B, 8bd4:C, 8bd4:D, 8bd4:E, 8bd5:H, 8bd5:I, 8bd5:E, 8bd5:F, 8bd5:G, 8bd5:J, 8bd5:K, 8bd6:R, 8bd6:X, 8bd6:S, 8bd6:T, 8bd6:U, 8bd6:V, 8bd6:W, 8bd6:Y, 8bd6:Z, 8ea3:A, 8ea3:B, 8ea3:C, 8ea3:K, 8ea3:J, 8ea3:L, 8ea3:H, 8ea3:E, 8ea3:D, 8ea3:F, 8ea3:G, 8ea3:I, 8ea4:E, 8ea4:C, 8ea4:D, 8ea4:B, 8ea4:M, 8ea4:I, 8ea4:A, 8ea4:F, 8ea4:G, 8ea4:H, 8ea4:J, 8ea4:K, 8ea4:L, 7m99:F, 7m99:A, 7m99:B, 7m99:C, 7m99:D, 7m99:E, 7m99:G, 7m99:H, 7m9a:H, 7m9a:I, 7m9a:J, 7m9a:K, 7m9a:B, 7m9a:C, 7m9a:D, 7m9a:E, 7m9a:F, 7m9a:L, 7m9b:H, 7m9b:I, 7m9b:J, 7m9b:K, 7m9b:B, 7m9b:C, 7m9b:D, 7m9b:E, 7m9b:F, 7m9b:L, 7m9c:I, 7m9c:J, 7m9c:B, 7m9c:C, 7m9c:D, 7m9c:E, 7m9c:F, 7m9c:H, 7m9c:K, 7m9c:L, 7n6i:D, 7n6i:E, 7n6i:F, 7n6i:G, 7n6i:H, 7n6i:I, 7n6i:J, 7plh:G, 7plh:A, 7plh:B, 7plh:C, 7plh:D, 7plh:E, 7plh:F, 8rdu:G, 8rdu:H, 8rdu:D, 8rdu:I, 8rdu:M, 8rdu:N, 8rdu:O, 8rdu:P, 8rdu:E, 8rdu:J, 8rdu:F, 8rdu:K, 8rdu:L, 8rdu:Q, 8rku:H, 8rku:I, 8rku:M, 8rku:N, 8rku:O, 8rku:P, 8rku:D, 8rku:E, 8rku:F, 8rku:G, 8rku:J, 8rku:K, 8rku:L, 8rku:Q, 7svu:B, 7svu:J, 7svu:A, 7svu:C, 7svu:D, 7svu:E, 7svu:F, 7svu:H, 7svu:K, 7svu:G, 7svu:I, 7svv:A, 7svv:G, 7svv:B, 7svv:H, 7svv:C, 7svv:I, 7svv:D, 7svv:J, 7svv:E, 7svv:F
4 6mfv:A 641 135 0.1125 0.0546 0.2593 0.008 6mfv:B, 6mfv:C, 6mfv:D
5 2v1u:A 382 103 0.0836 0.0681 0.2524 0.024
6 8fcv:R 343 256 0.1865 0.1691 0.2266 0.028 8fcu:Q, 8fcv:Q, 8fcv:S, 8fcv:T, 8fcv:U, 8fcv:V, 8fcv:W, 8fcw:R, 8fcw:S, 8fcw:T, 8fcw:U, 8fcw:V, 8fcx:R, 8fcx:S, 8fcx:T, 8fcx:U, 8fcx:V, 8ff4:Q, 8ff4:R, 8ff4:S, 8ff4:T, 8ff4:U, 8ff4:V, 8ff4:W
7 7b9v:Q 624 77 0.0740 0.0369 0.2987 0.052
8 7sqc:1A 1639 95 0.0900 0.0171 0.2947 0.12
9 7sqc:1C 1700 95 0.0900 0.0165 0.2947 0.14 7sqc:1D
10 7mcs:G 358 236 0.1479 0.1285 0.1949 0.14
11 7sqc:1B 1660 94 0.0900 0.0169 0.2979 0.14
12 2qby:A 366 119 0.0836 0.0710 0.2185 0.31
13 6ui4:A 692 115 0.0965 0.0434 0.2609 0.55
14 6s5h:A 175 41 0.0547 0.0971 0.4146 0.80 6hdu:A, 6hdu:B, 6hdu:C, 6hdu:D
15 6cy5:B 318 29 0.0450 0.0440 0.4828 0.80 6cy5:A
16 4l79:A 734 47 0.0482 0.0204 0.3191 1.3 6c1d:P, 6c1g:P
17 6rm8:A 655 60 0.0643 0.0305 0.3333 1.5 6fa5:A, 6faa:A, 6fac:A, 6rm9:A, 6rma:A, 6rmb:A, 6rmc:A, 6rmc:B, 6zm2:A
18 1djo:A 330 126 0.0900 0.0848 0.2222 1.5 1djo:B, 1djp:A, 1djp:B, 4pga:A, 4pga:B, 6wyw:A, 6wyw:B, 6wyw:C, 6wyw:D, 6wyx:A, 6wyx:B, 6wyx:C, 6wyx:D, 6wyy:A, 6wyy:B, 6wyy:C, 6wyy:D, 6wyz:A, 6wyz:B, 6wyz:C, 6wyz:D, 6wz4:A, 6wz4:B, 6wz4:C, 6wz4:D, 6wz6:A, 6wz6:B, 6wz6:C, 6wz6:D
19 5l3w:A 297 24 0.0354 0.0370 0.4583 1.7 5l3s:B, 5l3s:D, 5l3s:F, 5l3s:H
20 4cz2:B 179 21 0.0354 0.0615 0.5238 1.8 4cym:A, 4cym:B, 4cym:C, 4cz2:A, 4cz2:C, 6ff8:A, 6ff8:B, 5oec:B, 5oed:B
21 7tjh:E 439 29 0.0386 0.0273 0.4138 2.0 7tji:E, 7tjj:E, 7tjk:E
22 5zr1:E 460 29 0.0386 0.0261 0.4138 2.2 7mca:E, 6rqc:E, 7tjf:E
23 5v8f:E 422 29 0.0386 0.0284 0.4138 2.2 6wgc:E, 6wgg:E, 6wgi:E
24 8sgd:A 291 37 0.0482 0.0515 0.4054 2.5 8fwp:A, 8pfh:A, 8sgd:C
25 1urj:B 1030 25 0.0289 0.0087 0.3600 2.6 1urj:A
26 7vex:A 412 74 0.0643 0.0485 0.2703 2.7 8h4m:A
27 6fvt:I 385 28 0.0386 0.0312 0.4286 3.6 6ef0:I, 6ef1:I, 6ef2:I, 6ef3:I, 6fvu:I, 6fvv:I, 6fvw:I, 6fvx:I, 6fvy:I, 5mp9:I, 5mpa:I, 5mpb:I, 5mpc:I, 7qo4:I, 7qo5:I, 7qo6:I
28 8act:A 873 52 0.0514 0.0183 0.3077 3.6 8act:B, 9f6c:B, 8qyp:A, 8qyq:A, 8qyq:B, 8qyr:B
29 8u8l:B 123 42 0.0450 0.1138 0.3333 4.4 8u8l:A
30 3zvk:F 78 21 0.0322 0.1282 0.4762 4.4 3zvk:E, 3zvk:G, 3zvk:H
31 7wbt:A 899 31 0.0418 0.0145 0.4194 5.0 7wbt:B, 7wbu:A
32 7c3k:B 389 38 0.0418 0.0334 0.3421 5.1 7c3k:A, 8jqz:A, 8jqz:B
33 8t0q:A 257 33 0.0418 0.0506 0.3939 5.3 8t0q:B, 8t0v:B
34 7jpo:A 352 41 0.0418 0.0369 0.3171 5.9 7jpr:A, 7jps:A, 5uj7:A, 5uj7:B, 5ujm:A
35 2hk9:A 269 59 0.0675 0.0781 0.3559 6.5 2hk9:B, 2hk9:C, 2hk9:D
36 1vg8:A 184 36 0.0386 0.0652 0.3333 6.8 7f6j:A, 7f6j:B, 6iyb:A, 6iyb:C, 8kb8:C, 8kb8:D, 3law:A, 3law:B, 3law:C, 3law:D, 3law:E, 1t91:A, 1t91:B, 1t91:C, 1t91:D, 1vg0:B, 1vg1:A, 1vg8:B, 1vg8:C, 1vg8:D, 1vg9:B, 1vg9:D, 1vg9:F, 1vg9:H, 6wcw:B, 1yhn:A, 5z2m:A, 5z2m:C, 8zq3:A
37 5l4g:L 389 65 0.0611 0.0488 0.2923 6.9 5gjq:L, 5gjr:L, 5gjr:z, 5m32:f, 6msb:E, 6msd:E, 6mse:E, 6msg:E, 6msh:E, 6msj:E, 7qxn:E, 7qxp:E, 7qxu:E, 7qxw:E, 7qxx:E, 7qy7:E, 7qya:E, 5t0c:AE, 5t0c:BE, 5t0g:E, 5t0h:E, 5t0i:E, 5t0j:E, 5vfp:E, 5vfr:E, 5vfs:E, 7w37:E, 7w38:E, 7w39:E, 7w3a:E, 7w3b:E, 7w3c:E, 7w3f:E, 7w3i:E, 7w3j:E, 7w3k:E, 7w3m:E, 6wjd:E, 6wjn:E
38 6hsy:A 190 81 0.0579 0.0947 0.2222 6.9
39 5c1s:A 288 29 0.0354 0.0382 0.3793 7.2 5c1s:B, 5c1t:A, 5c1t:B
40 6fvt:K 394 28 0.0354 0.0279 0.3929 7.9 6ef0:K, 6ef1:K, 6ef2:K, 6ef3:K, 6fvu:K, 6fvv:K, 6fvw:K, 6fvx:K, 6fvy:K, 5mp9:K, 5mpa:K, 5mpb:K, 5mpc:K, 7qo4:K, 7qo5:K, 7qo6:K
41 8fhk:C 574 36 0.0418 0.0226 0.3611 8.2 8fmv:C, 8fpf:C, 7m33:C, 8szc:C, 8t1p:C
42 2fna:A 352 244 0.1608 0.1420 0.2049 9.2 2fna:B
43 4l1o:B 452 72 0.0611 0.0420 0.2639 9.2 8bb8:A, 8bb8:B, 4h80:A, 4h80:B, 4h80:C, 4h80:D, 4h80:E, 4h80:F, 4h80:G, 4h80:H, 4l1o:A, 4l2o:A, 4l2o:B, 4l2o:E, 4l2o:G, 3szb:A, 3szb:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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