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BioLiP
>protein
TQSVGEAAEKSFVMLASVLFAGAVGGPGIKMKGQGPAWPFNAQIPFTPSEFLAVTALGHIIGTGVILGI

The query sequence (length=69) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7dr2:aK 69 69 1.0000 1.0000 1.0000 1.01e-43 7dr0:K, 7dr2:cK
2 7y7b:K 78 69 0.3913 0.3462 0.3913 4.26e-08 7y8a:K
3 7y5e:KN 70 62 0.3333 0.3286 0.3710 9.27e-07 7y5e:K2, 7y7a:K7, 7y7a:Ko
4 6kif:K 78 76 0.3913 0.3462 0.3553 2.86e-05 6kif:U, 6kif:m, 6kig:K, 6kig:U, 6kig:m
5 6kmx:aK 46 51 0.3043 0.4565 0.4118 6.54e-04 6kmx:bK, 6kmx:cK
6 8htu:K 81 74 0.3333 0.2840 0.3108 6.90e-04 7ksq:K, 7kux:K, 6l35:K, 7xqp:K
7 7fix:K1 79 63 0.3188 0.2785 0.3492 0.002 7fix:K2, 7fix:K3, 6tra:K, 6trc:K, 6trc:k, 6trc:9, 6trd:K, 6trd:k, 6trd:9
8 8wgh:K 83 24 0.2029 0.1687 0.5833 0.018
9 8j6z:K 84 74 0.3043 0.2500 0.2838 0.020 7dkz:K, 8j7b:K, 5l8r:K, 4rku:K, 6yac:K, 6yez:K, 6zoo:K, 6zxs:K
10 8wm6:K 69 68 0.3478 0.3478 0.3529 0.021 8wmj:K, 8wmv:K, 8wmw:K
11 7m75:K 47 51 0.2609 0.3830 0.3529 0.025 4fe1:K, 1jb0:K, 7m76:K, 7m78:K, 3pcq:K, 6pfy:K, 6pfy:T, 6pfy:g, 6pgk:T, 6pgk:K, 6pgk:g, 5zf0:K1, 5zf0:K2, 5zf0:K3, 5zf0:K4, 5zf0:K6, 5zf0:K5
12 8j7a:K 56 65 0.3043 0.3750 0.3231 0.049
13 7wfd:AK 65 66 0.3478 0.3692 0.3636 0.049 7wfe:BK, 7wg5:AK, 7wg5:BK
14 7a4p:K 86 24 0.1739 0.1395 0.5000 0.056 6zzx:K, 6zzy:K
15 4l6v:K 80 60 0.2899 0.2500 0.3333 0.071 6hqb:K, 4l6v:k, 4l6v:0, 7o1v:K, 5oy0:K, 5oy0:k, 5oy0:8, 6uzv:K, 6uzv:k, 6uzv:8
16 8wwu:B 492 57 0.2464 0.0346 0.2982 0.073 8wwu:A, 8wwu:C, 8wwu:D, 8wwu:E, 8wwu:F, 8wwv:A, 8wwv:B, 8wwv:C, 8wwv:D, 8wwv:E, 8wwv:F, 8x6z:A, 8x6z:B, 8x6z:C, 8x6z:D, 8x6z:E, 8x6z:F
17 4xk8:k 46 24 0.1884 0.2826 0.5417 0.074 4xk8:K
18 8bcv:K 88 42 0.1884 0.1477 0.3095 0.076 7ew6:K, 7ewk:K, 7f9o:K, 7f9o:n, 2wse:K, 5zji:K
19 8cmo:K 89 24 0.1884 0.1461 0.5417 0.12
20 6igz:K 80 24 0.1594 0.1375 0.4583 0.29
21 6tcl:K 60 27 0.1739 0.2000 0.4444 0.35 6tcl:KK
22 8wey:K 63 58 0.2754 0.3016 0.3276 0.42
23 6k61:k 78 59 0.3043 0.2692 0.3559 0.43 6jeo:aK, 6jeo:bK, 6jeo:cK, 6jeo:dK, 6k61:K, 6tcl:K1, 6tcl:K2
24 4y28:K 57 23 0.1739 0.2105 0.5217 0.44
25 6vpv:K 78 19 0.1594 0.1410 0.5789 0.60 6vpv:k, 6vpv:9
26 7s3d:K 75 67 0.3478 0.3200 0.3582 0.90 7s3d:T, 7s3d:k
27 4kt0:K 53 20 0.1449 0.1887 0.5000 1.1
28 8asp:k 77 58 0.3188 0.2857 0.3793 1.3 8am5:k, 8asl:k, 6nwa:K, 6nwa:k, 6nwa:T, 7umh:K, 7umh:T, 7umh:k
29 5zgb:K 59 21 0.1304 0.1525 0.4286 2.4 7blz:K, 6fos:K, 5zgh:K
30 6zrx:CCC 360 33 0.1884 0.0361 0.3939 3.7 6zrx:AAA, 6zrx:BBB, 6zrx:DDD, 6zry:AAA, 6zry:BBB
31 7qco:K 65 48 0.2609 0.2769 0.3750 3.7 7qco:R, 7qco:r, 7qco:k
32 7dz7:K 86 24 0.1594 0.1279 0.4583 4.1 7bgi:K, 7blx:K, 7d0j:K, 7dz8:K, 6ijj:K, 6ijo:K, 7r3k:K, 7zq9:K, 7zqc:K, 7zqd:K, 7zqd:K2
33 5x1n:A 460 23 0.1304 0.0196 0.3913 5.5 5x1j:A, 5x1j:B, 5x1j:C, 5x1k:A, 5x1k:B, 5x1k:C, 5x1l:B, 5x1l:C, 5x1m:B, 5x1m:C, 5x1n:B
34 7ane:j 180 33 0.1594 0.0611 0.3333 6.0
35 6k8t:A 662 21 0.1594 0.0166 0.5238 7.8 6k8t:B, 6k8u:A, 6k8u:B
36 5b46:A 627 38 0.1449 0.0159 0.2632 8.3 5b47:A
37 4hea:1 437 34 0.1594 0.0252 0.3235 8.5 2fug:1, 2fug:A, 2fug:J, 2fug:S, 4hea:B, 6i0d:1, 6i0d:B, 6i1p:1, 6i1p:B, 3i9v:1, 3i9v:A, 3iam:1, 3iam:A, 3ias:1, 3ias:A, 3ias:J, 3ias:S, 3m9s:1, 3m9s:A, 6q8o:1, 6q8o:B, 6q8w:1, 6q8w:B, 6q8x:1, 6q8x:B, 6y11:1, 6y11:B, 2ybb:1, 6ziy:1, 6zjl:1, 6zjn:1, 6zjy:1
38 5u30:A 1085 34 0.1739 0.0111 0.3529 9.1 5u31:A, 5u33:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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