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BioLiP
>protein
TQSNPNEQNVELNRTSLYWGLLLIFVLAVLFSNYFFN

The query sequence (length=37) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5xnm:L 37 37 1.0000 1.0000 1.0000 1.14e-20 5mdx:L, 5mdx:l, 7oui:L, 7oui:l, 5xnm:l
2 7vd5:L 38 37 0.8649 0.8421 0.8649 3.97e-17 8j5k:L, 8j5k:l, 7vd5:l, 8xlp:L
3 7y5e:L6 37 37 0.8108 0.8108 0.8108 6.57e-16 7y5e:l6, 7y7a:LO, 7y7a:lO, 7y7a:LZ, 7y7a:lZ, 4yuu:l2, 4yuu:L2
4 7pi0:L 38 37 0.7838 0.7632 0.7838 2.24e-15 7pi0:l, 7pi5:l, 7pin:l, 7pin:L1, 7piw:L, 7piw:L1, 7pnk:l
5 8wql:LD 38 33 0.7297 0.7105 0.8182 1.22e-13 8wql:LE, 8wql:L1
6 7ymi:L 36 34 0.6757 0.6944 0.7353 7.91e-06 7ymi:l, 7ymm:1L, 7ymm:2L, 7ymm:3L, 7ymm:4L
7 3a0b:L 37 36 0.7568 0.7568 0.7778 3.37e-04 3a0b:l, 5b66:L, 7czl:L, 7czl:l, 7dxh:l, 7eda:L, 5mx2:L, 5mx2:l, 7nhp:L, 7nhq:L, 4pj0:L, 4pj0:l
8 6wj6:L 31 31 0.6216 0.7419 0.7419 0.013

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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