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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TQSLHYSSPRETLTDTIMMAKIRKNLTFEAINQGTGLSLAFVTAALLGQHPLPEQAARVVAEKLDLDEDAIRLLQTIPLR
GSIPGGVPTDPTIYRFYEMVQIYGSTLKALVHEQFGDGIISAINFKLDIKKVPDPDGGERAVITLDGKYLPTKPF

The query sequence (length=155) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6tv0:A 155 155 0.9419 0.9419 0.9419 2.48e-105 6tv0:J, 6tv0:G, 6tv0:I, 6tv0:B, 6tv0:E, 6tv0:C, 6tv0:H, 6tv0:D, 6tv0:F, 4y42:B, 4y42:H, 4y42:I, 4y42:J
2 1dwk:B 156 154 0.6968 0.6923 0.7013 1.87e-75 1dwk:D, 1dwk:C, 1dwk:I, 1dwk:E, 1dwk:F, 1dwk:G, 1dwk:H, 1dwk:A, 1dwk:J, 2iu7:A, 2iu7:J, 2iu7:C, 2iu7:I, 2iu7:B, 2iu7:D, 2iu7:E, 2iu7:F, 2iu7:G, 2iu7:H, 2iuo:B, 2iuo:C, 2iuo:D, 2iuo:G, 2iuo:H, 2iuo:I, 2iv1:G, 2iv1:I, 2ivb:C, 2ivb:A, 2ivb:G, 2ivb:F, 2ivb:D, 2ivb:H, 2ivb:I, 2ivq:H, 2ivq:J, 8k6h:A, 8k6h:B, 8k6h:C, 8k6h:D, 8k6h:E, 8k6h:F, 8k6h:G, 8k6h:H, 8k6h:I, 8k6h:J, 8k6s:A, 8k6s:B, 8k6s:I, 8k6s:G, 8k6s:F, 8k6x:A, 8k6x:B, 8k6x:H, 8k6x:C, 8k6x:D, 8k6x:E, 8k6x:G, 8k6x:F, 8k6x:I, 8k6x:J
3 6xgt:D 160 143 0.3484 0.3375 0.3776 7.00e-24 6xgt:F, 6xgt:G, 6xgt:H, 6xgt:A, 6xgt:B
4 3boy:A 147 50 0.1161 0.1224 0.3600 0.53 3boy:B, 3boy:C, 4h4l:A, 4h4l:B, 4h4l:C, 4h4l:D, 4h4l:E, 4h4l:F, 4h4l:G, 4h4l:H, 4h4l:I, 4h4l:J, 4h4l:K, 4h4l:L, 1vea:A, 1vea:B, 1wmq:A, 1wmq:B, 1wpu:A, 1wpu:B, 1wpv:A, 1wpv:C, 1wpv:B, 1wrn:A, 1wrn:C, 1wrn:B, 1wro:A, 1wro:C, 1wro:B, 1wrq:A, 1wrq:B
5 7d50:B 255 50 0.1226 0.0745 0.3800 2.1 7d4r:A, 7d50:A, 7d53:A, 7d53:B, 7d53:C, 7d53:D
6 3sy9:B 372 39 0.0903 0.0376 0.3590 2.3 3sy9:A, 3sy9:C, 3sy9:D
7 2vb6:A 724 89 0.1742 0.0373 0.3034 3.0
8 5yy2:A 569 19 0.0581 0.0158 0.4737 5.1
9 8gy3:C 732 34 0.0774 0.0164 0.3529 6.4
10 4nhe:B 326 56 0.1097 0.0521 0.3036 6.8 4nhe:A, 4nhe:C
11 7d4r:B 215 42 0.1097 0.0791 0.4048 6.9
12 6nsi:A 285 48 0.1097 0.0596 0.3542 7.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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