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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TQPSDWAYIAEHIVFSYQGQSKTRALRVRNDVSGQWRRNILPKLVPRQLLTTSREVTLEEGWYKELLRRGVLLEDLTSNV
DDDGAITVAIEIKPKWGFLPCAGHLQPPESVSIKSHVSRFRLHQHFRGRADDPPYDPLDLFSGDKMRMRTALDGLWTMWE
ISRGKSNNWKVFIGSKEISPDDLQRGLLPMGGDDLVTNITQLTLSALQTSSALPLLKNLQQNLDPIDISSLAALFQAEHP
NSPIFDPDLIAEVSAVELNSFVDIYISDPQAGQRMDSWSLRERIIAYALSAIFKDCSLFVRGVLKHAEDGAWRLVSGGES
VKVIDLDLKPVKNIQKWAETDEKVWKHWLKTKGT

The query sequence (length=354) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5xu6:C 379 372 1.0000 0.9340 0.9516 0.0 5xu6:A, 5xu6:B, 5xu6:D
2 6fl3:B 420 293 0.2119 0.1786 0.2560 2.75e-13 4axc:A, 4axf:A, 6fjk:B, 6fl8:B, 6gfg:B, 6gfg:A, 6gfh:A, 6gfh:B, 4lv7:B, 3udt:A, 3udt:B, 3udz:A, 3udz:B, 2xan:A, 2xao:A
3 4axd:A 433 299 0.2260 0.1848 0.2676 1.21e-12 4aqk:A, 4axe:A, 6fjk:A, 6fl3:A, 6fl8:A, 2xal:A, 2xal:B, 2xam:A, 2xam:B, 2xan:B, 2xao:B, 2xar:A, 2xar:B
4 4lv7:A 390 424 0.3023 0.2744 0.2524 2.84e-12 3uds:A, 3uds:B
5 5mwl:A 421 316 0.2232 0.1876 0.2500 2.19e-10 5mw8:A, 5mwl:B, 5mwm:A
6 4xz6:A 291 165 0.1130 0.1375 0.2424 0.71 4xz6:B
7 4b45:A 334 41 0.0395 0.0419 0.3415 2.8
8 6b9t:D 453 62 0.0480 0.0375 0.2742 4.8 6b9s:A, 6b9s:D, 6b9s:C, 6b9s:G, 6b9s:E, 6b9t:A, 6b9t:B, 6b9t:C, 6b9t:E, 6b9t:F, 6b9t:G, 6b9t:H
9 1kkt:A 475 28 0.0282 0.0211 0.3571 6.7 1kre:B, 1kre:A, 1krf:A, 1krf:B, 2ri9:A, 2ri9:B
10 2glf:A 450 57 0.0537 0.0422 0.3333 7.8 2glf:B, 2glf:C, 2glf:D
11 5tpk:A 202 35 0.0452 0.0792 0.4571 9.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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