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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TQGVITWDPYEYNAQNTTLYTKDLRDSFKEVRYNIWRTADGPESKQTFTSQEKDRDFALPLHLKTFHLKRGEFQIETVGI
KEDNTETNLVTSKITFQQHVPVLMYHAIEKFPGPSDGDYGLYVPPEQFEKHMQYLKDNGYTMLTFERWNDINRVNKPIFI
TMDDGRKNNMNALHILQKLKDDTFQPAATEFLTANEIDKPNRLSTDDIKQMMDSGIFSIQSHTANHTMMAHSNNYDEELR
GSKEKIEALTGKKVIALAYPVGSYNDPAVEETKKYYEFAVTTDHGNHITKGMPNEQYLIKRHFVGPNTSMEKFISLIK

The query sequence (length=318) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6go1:A 318 318 1.0000 1.0000 1.0000 0.0 6go1:B
2 4hd5:A 316 317 0.5566 0.5601 0.5584 4.04e-127 4v33:A, 4v33:B
3 6dq3:A 227 223 0.1981 0.2775 0.2825 7.16e-16 6dq3:B
4 4u10:A 264 187 0.1321 0.1591 0.2246 6.85e-06 4u10:B
5 4f9j:A 599 237 0.1478 0.0785 0.1983 0.33 4f9d:A, 4f9d:B, 4f9j:B, 4p7n:A, 4p7q:A, 4p7r:A, 3vus:A, 3vus:B
6 2j13:A 207 122 0.1101 0.1691 0.2869 0.35
7 2zi8:A 299 102 0.0912 0.0970 0.2843 0.45 2zi8:B, 2zyq:A, 2zyq:B
8 6skz:A 2638 83 0.0629 0.0076 0.2410 0.50 6sl0:A, 6sl0:B
9 6sl1:A 2652 83 0.0629 0.0075 0.2410 0.52 6sky:A, 6sky:B
10 7xn7:B 1164 31 0.0409 0.0112 0.4194 1.1 6a5l:B, 6a5o:B, 6a5p:B, 6a5r:B, 6a5t:B, 6a5u:B, 8h0v:B, 8h0w:B, 8he5:B, 6inq:B, 6ir9:B, 6j4w:B, 6j4x:B, 6j4y:B, 6j4z:B, 6j50:B, 6j51:B, 8jh2:B, 8jh3:B, 8jh4:B, 7wbv:B, 7wbw:B, 7wbx:B, 5xog:B, 5xon:B, 7xse:B, 7xsx:B, 7xsz:B, 7xt7:B, 7xtd:B, 7xti:B, 8yfq:B, 8yfr:B
11 3mq7:E 99 33 0.0440 0.1414 0.4242 1.3 3mq7:K
12 3hwp:A 288 27 0.0346 0.0382 0.4074 4.4 3hwp:B
13 1f3t:B 381 45 0.0409 0.0341 0.2889 4.5 1f3t:A, 1f3t:C, 1f3t:D, 1njj:A, 1njj:B, 1njj:C, 1njj:D, 1qu4:A, 1qu4:B, 1qu4:C, 1qu4:D, 1szr:C, 1szr:D, 1szr:A, 1szr:B, 2tod:A, 2tod:B, 2tod:C, 2tod:D
14 6sem:B 530 52 0.0472 0.0283 0.2885 4.5 6sem:A, 6sem:C, 6sem:D, 6sf0:B, 6sf0:A, 6sf0:C, 6sf0:D
15 5x4z:N 1074 25 0.0346 0.0102 0.4400 6.0 5x4z:B, 5x51:B, 5x51:N
16 7mcs:G 358 53 0.0440 0.0391 0.2642 6.7
17 4tmc:A 399 58 0.0566 0.0451 0.3103 6.7 4tmb:A, 4tmb:B, 4tmb:C, 4tmb:D, 4tmc:B, 4tmc:C, 4tmc:D
18 8glw:A 483 52 0.0440 0.0290 0.2692 7.3 8glu:G, 8glu:F, 8glu:E, 8glw:E, 8glw:F, 8glw:B, 8glw:C, 8glw:D, 8glw:G, 8glx:F, 8glx:B, 8glx:G, 8glx:E, 8glx:C, 8glx:A, 7mbw:A, 7mbw:B, 7mbw:C, 7mbw:D, 7mcs:A, 7mcs:D, 7mcs:B, 7mcs:C, 7mcs:E, 7mcs:F, 8vcj:B, 8vcj:F, 8vcj:C, 8vcj:A, 8vcj:D, 8vcj:E, 8vcj:G, 8vct:C, 8vct:B, 8vct:G, 8vct:E, 8vct:F, 8vct:A
19 7cfd:F 182 28 0.0346 0.0604 0.3929 8.9 7cfd:B, 7cfd:A, 7cfd:C, 7cfd:E, 7cfd:G, 7cfd:H, 7cfd:D
20 7vua:A 785 38 0.0440 0.0178 0.3684 8.9 7vua:B
21 8a22:Ye 106 38 0.0472 0.1415 0.3947 9.4 8apn:Ye, 8apo:Ye

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218