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BioLiP
>protein
TPSNVVLIGKKPVMNYVLAALTLLNQGVSEIVIKARGRAISKAVDTVEIVRNRFLPDKIEIKEIRVGSQVVSRVSTIEIA
IRKK

The query sequence (length=84) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3wbm:A 86 84 1.0000 0.9767 1.0000 5.14e-54 3wbm:B, 3wbm:C
2 2z7c:A 89 88 0.5714 0.5393 0.5455 3.22e-28 2z7c:B, 2z7c:C
3 1udv:A 88 74 0.3333 0.3182 0.3784 3.68e-10
4 6cnh:A 321 39 0.1786 0.0467 0.3846 1.1
5 6pk6:A 338 39 0.1786 0.0444 0.3846 1.3 4ifc:A, 4ifc:B, 4iir:A, 4iir:B, 4ijp:A, 4ijp:B, 6pjj:A, 6pjj:B, 6pjj:C, 6pjj:D, 6qx9:K
6 5hje:A 676 45 0.1667 0.0207 0.3111 2.3 5hyv:A, 5i51:A, 5i5e:A, 5i5g:A, 5xps:A, 5xqa:A, 5xqk:A, 5xrv:A, 5xry:A, 5xs6:A, 5xsa:A, 5xsb:A, 5xsm:A, 5xt0:A, 5xt4:A, 5xtl:A, 5xtv:A, 5xtx:A, 5xu2:A, 5xu9:A, 5xuf:A, 5xvt:A
7 5tjg:D 1475 25 0.1429 0.0081 0.4800 2.7
8 1hqm:D 1175 25 0.1429 0.0102 0.4800 2.8 1i6v:D
9 4xln:J 1367 25 0.1429 0.0088 0.4800 3.0 3aoh:D, 3aoh:N, 3aoi:D, 3aoi:N, 6asg:D, 4gzy:D, 4gzz:D, 5i2d:D, 5i2d:O, 4mq9:D, 7rdq:D, 4wqt:D, 4wqt:I, 4wqt:N, 4xlp:J, 4xlq:J, 4xlr:J, 4xls:J
10 2mbv:A 96 34 0.1310 0.1146 0.3235 3.2
11 2gj2:A 79 37 0.1548 0.1646 0.3514 3.6 2gj2:D, 2gj2:B, 2gj2:C
12 3vth:A 753 37 0.1310 0.0146 0.2973 3.7 3vth:B, 3vti:A, 3vti:B
13 3dxj:D 1504 25 0.1310 0.0073 0.4400 5.8 6cuu:D, 5d4c:D, 5d4c:N, 5d4d:D, 5d4d:N, 5d4e:D, 5d4e:N, 3dxj:N, 5e17:D, 5e18:D, 7eh0:D, 7eh1:D, 7eh2:D, 7eh2:N, 4g7h:D, 4g7h:N, 4g7o:D, 4g7o:N, 4g7z:D, 4g7z:N, 6kqd:D, 6kqd:N, 6kqe:D, 6kqf:D, 6kqg:D, 6kqh:D, 6kql:D, 6kqm:D, 6kqn:D, 6l74:D, 6lts:D, 7mlb:D, 7mli:D, 7mlj:D, 4oin:D, 4oio:D, 4oip:D, 4oiq:D, 4oir:D, 6ovr:D, 6ovy:D, 6ow3:D, 6oy5:D, 6oy6:D, 6oy7:D, 6p70:D, 6p71:D, 4q4z:D, 4q5s:D, 5tmc:D, 5tmf:D, 5vo8:D, 5voi:D, 8w8n:D, 8w8o:D, 8w8p:D, 3wod:D, 6wox:D, 6woy:D, 5x21:D, 5x22:N, 5xj0:D, 4xln:D, 4xlp:D, 4xlq:D, 4xlr:D, 4xls:D, 1ynj:D, 1ynn:D
14 4wqs:D 1151 25 0.1310 0.0096 0.4400 6.2
15 5x22:D 1438 25 0.1310 0.0076 0.4400 6.3
16 7p7k:C 568 22 0.1190 0.0176 0.4545 6.3 7p7e:C
17 7p63:C 589 22 0.1190 0.0170 0.4545 6.3 7nyr:D, 7nyu:D, 7nz1:D, 7p64:C, 7p69:C, 7p7c:C, 7p7j:C, 7p7l:C, 7p7m:C, 7z7r:C, 7z7s:C, 7z7t:C, 7z7v:C, 7z80:C, 7z83:C, 7z84:C, 7zc5:C, 7zci:C
18 2a68:D 1392 25 0.1310 0.0079 0.4400 6.3 2a68:N, 2a69:D, 2a69:N, 2a6e:D, 2a6e:N, 2a6h:D, 2a6h:N, 2be5:D, 2be5:N, 2cw0:D, 2cw0:N, 1iw7:D, 1iw7:N, 1smy:D, 1smy:N, 1zyr:D, 1zyr:N
19 2o5j:D 1264 25 0.1310 0.0087 0.4400 6.5 2o5j:N
20 4wqs:N 1288 25 0.1310 0.0085 0.4400 6.5
21 3aoh:I 1289 25 0.1310 0.0085 0.4400 6.5 3aoi:I
22 3eql:D 1321 25 0.1310 0.0083 0.4400 6.5 3eql:N, 8hsg:J, 8hsh:J, 8hsl:J, 8hsr:J, 6m6a:D, 6m6b:D, 6m6c:D, 2o5i:D, 2o5i:N, 2ppb:D, 2ppb:N

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218