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BioLiP
>protein
TPDCVTGKVEYTKYNDDDTFTVKVGDKELFTNRWNLQSLLLSAQITGMTVTIKTNACHNGGGFSEVIFR

The query sequence (length=69) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1bos:A 69 69 1.0000 1.0000 1.0000 1.27e-47 1bos:B, 1bos:C, 1bos:D, 1bos:E, 1bos:F, 1bos:G, 1bos:H, 1bos:I, 1bos:J, 1bos:K, 1bos:L, 1bos:M, 1bos:N, 1bos:O, 1bos:P, 1bos:Q, 1bos:R, 1bos:S, 1bos:T, 1c4q:A, 1c4q:B, 1c4q:C, 1c4q:D, 1c4q:E, 2c5c:A, 2c5c:F, 2c5c:B, 2c5c:C, 2c5c:D, 2c5c:E, 2c5c:G, 2c5c:H, 2c5c:I, 2c5c:J, 1cqf:A, 1cqf:B, 1cqf:C, 1cqf:D, 1cqf:E, 1d1i:A, 1d1i:B, 1d1i:C, 1d1i:D, 1d1i:E, 1d1k:A, 1d1k:B, 1d1k:C, 1d1k:D, 1d1k:E, 1qnu:A, 1qnu:B, 1qnu:C, 1qnu:D, 1qnu:E
2 7d6q:C 70 66 0.6377 0.6286 0.6667 2.76e-29 7d6q:B, 7d6q:D, 7d6q:F, 7d6r:D, 7d6r:B, 7d6r:C, 7d6r:F, 2ga4:B, 2ga4:C, 2ga4:D, 2ga4:F, 4m1u:F, 4m1u:B, 4m1u:C, 4m1u:D, 3mxg:F, 3mxg:J, 3mxg:C, 3mxg:D, 1r4p:B, 1r4p:C, 1r4p:D, 1r4p:E, 1r4p:F, 7ujj:B, 7ujj:C, 7ujj:D, 7ujj:F, 7vhc:D, 7vhc:B, 7vhc:C, 7vhc:F, 7vhd:D, 7vhd:B, 7vhd:C, 7vhd:F, 7vhe:B, 7vhe:C, 7vhe:D, 7vhe:F, 7vhf:B, 7vhf:C, 7vhf:D, 7vhf:F
3 2bos:A 68 67 0.6232 0.6324 0.6418 1.01e-28 2bos:B, 2bos:C, 2bos:E
4 7ybu:A 670 51 0.2754 0.0284 0.3725 0.010 7ybu:B, 7ybu:D, 7ybu:F, 7ybu:H, 7ybu:J
5 8qbb:A 271 47 0.2319 0.0590 0.3404 0.046 8qbb:J, 8qbb:F, 8qbb:B, 8qbb:C, 8qbb:I, 8qbb:D, 8qbb:E, 8qbb:K, 8qbb:L, 8qbb:G, 8qbb:M, 8qbb:H, 8qbb:N, 8qbd:A, 8qbd:B, 8qbd:C, 8qbd:I, 8qbd:D, 8qbd:J, 8qbd:E, 8qbd:K, 8qbd:F, 8qbd:L, 8qbd:G, 8qbd:M, 8qbd:H, 8qbd:N, 8qbf:A, 8qbf:B
6 4aq1:A 721 42 0.2029 0.0194 0.3333 3.1 4aq1:C
7 6nus:A 715 51 0.3043 0.0294 0.4118 4.5
8 7ooc:H 128 60 0.2464 0.1328 0.2833 4.9 7p6z:H, 7pah:H, 7pai:H, 7paj:H, 7pak:H, 7pal:H, 7pam:H, 7pan:H, 7pao:H, 7paq:H, 7par:H, 7pas:H, 7ph9:H, 7pha:H, 7phb:H, 7phc:H, 7pi8:H, 7pi9:H, 7pia:H, 7pib:H, 7pic:H, 7pio:H, 7pip:H, 7piq:H, 7pir:H, 7pis:H, 7pit:H
9 4v6i:Aa 319 39 0.1594 0.0345 0.2821 5.7 7a1g:O, 7b7d:O, 8bn3:SR, 8bqd:O, 8bqx:O, 8cah:O, 8cas:h, 8cbj:g, 8ccs:7, 8cdl:7, 8cdr:7, 8ceh:7, 8cf5:7, 8cg8:7, 8cgn:7, 8civ:7, 8cku:7, 8cmj:7, 5dat:SR, 5dat:sR, 5dc3:SR, 5dc3:sR, 5dge:SR, 5dge:sR, 5dgf:SR, 5dgf:sR, 5dgv:SR, 5dgv:sR, 8eub:Bg, 8evp:Bg, 8evq:Bg, 8evr:Bg, 8evs:Bg, 8evt:Bg, 8ewb:Bg, 8ewc:Bg, 6fai:g, 5fci:SR, 5fci:sR, 5fcj:SR, 5fcj:sR, 6gq1:AV, 6gqb:AV, 6gqv:AV, 6hhq:h, 6hhq:Rb, 5i4l:SR, 5i4l:sR, 6i7o:O, 6i7o:Ob, 3j6x:RA, 3j6y:RA, 3j77:RC, 3j78:RC, 5juo:WA, 5jup:WA, 5jus:WA, 5jut:WA, 5juu:WA, 8k2d:Sg, 8k82:Sg, 5lyb:SR, 5lyb:sR, 5m1j:g2, 5mc6:O, 5mei:sR, 5mei:h, 7mpi:Bg, 7mpj:Bg, 7n8b:Bg, 5ndg:SR, 5ndg:sR, 5ndv:SR, 5ndv:sR, 5ndw:SR, 5ndw:sR, 7nrc:SO, 7nrd:SO, 5obm:SR, 5obm:sR, 5on6:sR, 5on6:h, 7osa:RACK, 7osm:RACK, 6q8y:O, 6rbe:g, 7rr5:Sg, 6s47:Bh, 6snt:g, 6sv4:O, 6sv4:Ob, 6sv4:Oc, 6t4q:Sg, 6t7i:Sg, 6t7t:Sg, 6t83:gb, 6t83:7, 5tbw:h, 5tbw:Rb, 6tb3:O, 5tga:SR, 5tga:sR, 5tgm:SR, 5tgm:sR, 6tnu:O, 4u3m:SR, 4u3m:sR, 4u3n:SR, 4u3n:sR, 4u3u:SR, 4u3u:sR, 4u4n:SR, 4u4n:sR, 4u4o:SR, 4u4o:sR, 4u4q:SR, 4u4q:sR, 4u4r:SR, 4u4r:sR, 4u4u:SR, 4u4u:sR, 4u4y:SR, 4u4y:sR, 4u4z:SR, 4u4z:sR, 4u50:SR, 4u50:sR, 4u51:SR, 4u51:sR, 4u52:SR, 4u52:sR, 4u53:SR, 4u53:sR, 4u55:SR, 4u55:sR, 4u56:SR, 4u56:sR, 4u6f:SR, 4u6f:sR, 4uer:R, 4v7h:AR, 4v7r:AT, 4v7r:CT, 4v88:Ag, 4v88:Cg, 4v8y:A6, 4v8z:A6, 6wdr:g, 6woo:gg, 6xiq:AV, 6z6j:Sg, 6z6k:Sg, 6zce:h, 7zpq:Ag, 7zrs:Ag, 6zu9:h, 7zuw:Ag, 7zux:Dg, 6zvi:R, 7zw0:sO

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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