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BioLiP
>protein
TPDCVTGKVEYTKYNDDDTFTVKVGDKELATNRANLQSLLLSAQITGMTVTIKTNACHNGGGFSEVIFR

The query sequence (length=69) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1bos:A 69 69 0.9710 0.9710 0.9710 2.80e-45 1bos:B, 1bos:C, 1bos:D, 1bos:E, 1bos:F, 1bos:G, 1bos:H, 1bos:I, 1bos:J, 1bos:K, 1bos:L, 1bos:M, 1bos:N, 1bos:O, 1bos:P, 1bos:Q, 1bos:R, 1bos:S, 1bos:T, 1c4q:A, 1c4q:B, 1c4q:C, 1c4q:D, 1c4q:E, 2c5c:A, 2c5c:F, 2c5c:B, 2c5c:C, 2c5c:D, 2c5c:E, 2c5c:G, 2c5c:H, 2c5c:I, 2c5c:J, 1cqf:A, 1cqf:B, 1cqf:C, 1cqf:D, 1cqf:E, 1d1i:A, 1d1i:B, 1d1i:C, 1d1i:D, 1d1i:E, 1d1k:A, 1d1k:B, 1d1k:C, 1d1k:D, 1d1k:E, 1qnu:A, 1qnu:B, 1qnu:C, 1qnu:D, 1qnu:E
2 7d6q:C 70 66 0.6232 0.6143 0.6515 1.24e-27 7d6q:B, 7d6q:D, 7d6q:F, 7d6r:D, 7d6r:B, 7d6r:C, 7d6r:F, 2ga4:B, 2ga4:C, 2ga4:D, 2ga4:F, 4m1u:F, 4m1u:B, 4m1u:C, 4m1u:D, 3mxg:F, 3mxg:J, 3mxg:C, 3mxg:D, 1r4p:B, 1r4p:C, 1r4p:D, 1r4p:E, 1r4p:F, 7ujj:B, 7ujj:C, 7ujj:D, 7ujj:F, 7vhc:D, 7vhc:B, 7vhc:C, 7vhc:F, 7vhd:D, 7vhd:B, 7vhd:C, 7vhd:F, 7vhe:B, 7vhe:C, 7vhe:D, 7vhe:F, 7vhf:B, 7vhf:C, 7vhf:D, 7vhf:F
3 2bos:A 68 66 0.6087 0.6176 0.6364 4.65e-27 2bos:B, 2bos:C, 2bos:E
4 8qbb:A 271 47 0.2464 0.0627 0.3617 0.004 8qbb:J, 8qbb:F, 8qbb:B, 8qbb:C, 8qbb:I, 8qbb:D, 8qbb:E, 8qbb:K, 8qbb:L, 8qbb:G, 8qbb:M, 8qbb:H, 8qbb:N, 8qbd:A, 8qbd:B, 8qbd:C, 8qbd:I, 8qbd:D, 8qbd:J, 8qbd:E, 8qbd:K, 8qbd:F, 8qbd:L, 8qbd:G, 8qbd:M, 8qbd:H, 8qbd:N, 8qbf:A, 8qbf:B
5 7ybu:A 670 51 0.2609 0.0269 0.3529 0.93 7ybu:B, 7ybu:D, 7ybu:F, 7ybu:H, 7ybu:J
6 4mt4:B 473 32 0.2029 0.0296 0.4375 1.3 4mt4:A, 4mt4:C
7 4aq1:A 721 42 0.2029 0.0194 0.3333 2.1 4aq1:C
8 6nus:A 715 51 0.3043 0.0294 0.4118 4.0
9 4nkt:B 308 32 0.1739 0.0390 0.3750 4.5
10 4e80:C 330 32 0.1739 0.0364 0.3750 4.6 4e80:A, 4e80:B, 4e80:D, 4ep7:A, 4ep7:B, 4fh5:A, 4fhp:A, 4fhv:A, 4fhw:A, 4fhx:A, 4fhy:A, 4nkt:A, 4nku:A, 4nku:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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