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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TNTLQVKLLSKNARMPERNHKTDAGYDIFSAETVVLEPQEKAVIKTDVAVSIPEGYVGLLTSRSGVSSKTHLVIETGKID
AGFHGNLGINIKNDHEDDKMQTIFLRNIDNEKIFEKERHLYKLGSYRIEKGERIAQLVIVPIWTPELKQVEEFESVSERG
EKGFGSSGV

The query sequence (length=169) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5cct:A 169 169 0.9882 0.9882 0.9882 2.69e-122 5cco:A, 5nyz:A, 5nz2:A, 3zez:A, 3zf0:A, 3zf1:A, 3zf4:A, 3zf5:A, 3zf6:A
2 4wrk:A 158 160 0.7219 0.7722 0.7625 2.34e-81 4gv8:A, 4gv8:C, 4gv8:B, 4gv8:D, 4gv8:F, 4gv8:E, 4wrk:B, 4wrk:C, 4wrk:D, 4wrk:E, 4wrk:F
3 6mjk:A 144 164 0.3136 0.3681 0.3232 1.17e-25
4 4oop:B 142 166 0.3195 0.3803 0.3253 2.39e-21 4oop:A, 4oop:C
5 6ljj:A 150 148 0.2722 0.3067 0.3108 2.43e-21 3ara:A, 3ara:C, 3ara:B, 3arn:A, 3arn:C, 3arn:B, 3ehw:A, 3ehw:B, 3ehw:C, 3ehw:X, 3ehw:Y, 3ehw:Z, 5h4j:A, 2hqu:A, 2hqu:B, 2hqu:C
6 5f9k:B 130 154 0.2722 0.3538 0.2987 6.79e-19 5f9k:A, 5f9k:C
7 4gcy:A 163 169 0.3018 0.3129 0.3018 4.59e-18 8cga:A, 5ect:A, 5edd:A, 3h6d:A, 3hza:A, 3i93:A, 3loj:A, 2py4:A, 1six:A, 1sjn:A, 1sjn:C, 1sjn:B, 1sm8:A, 1sm8:B, 1sm8:C, 1smc:A, 1smc:B, 1smc:C, 1snf:A, 1snf:C, 1snf:B
8 2ol1:C 125 144 0.2604 0.3520 0.3056 2.33e-16 2oke:A, 2oke:C, 2oke:B, 2ol1:A, 2ol1:B
9 1f7r:A 133 147 0.2899 0.3684 0.3333 1.44e-15 1f7k:A, 1f7k:B, 1f7n:A, 1f7n:B, 1f7p:A, 1f7p:C, 1f7p:B, 1f7q:A, 1f7q:C, 1f7q:B
10 6hde:B 152 174 0.2959 0.3289 0.2874 1.15e-14 1eu5:A, 1euw:A, 6hde:A, 6hde:C, 2hrm:A, 1rn8:A, 1rnj:A, 1seh:A, 1syl:A
11 3f4f:A 138 163 0.2426 0.2971 0.2515 1.88e-14 3f4f:B, 3f4f:C, 3p48:A, 3p48:C, 3p48:B
12 8hrv:B 145 168 0.2189 0.2552 0.2202 1.18e-11 8hrv:A, 8hrv:C
13 5y5p:D 171 168 0.2959 0.2924 0.2976 3.56e-10 5y5p:A, 5y5p:B, 5y5p:C, 5y5p:E, 5y5p:F, 5y5q:A, 5y5q:B, 5y5q:C
14 7n6s:C 147 163 0.2485 0.2857 0.2577 1.10e-07 7n6s:A, 7n6s:B, 7n6s:F, 7n6s:D, 7n6s:E
15 2y8c:C 136 165 0.2604 0.3235 0.2667 8.09e-07 2y8c:B
16 3t64:A 153 179 0.2840 0.3137 0.2682 1.02e-06 3t60:A, 3t60:B, 3t60:C, 3t64:B, 3t64:C, 3t6y:A, 3t6y:B, 3t6y:C, 3t70:A, 3t70:B, 3t70:C, 1vyq:A, 1vyq:B, 1vyq:C, 2y8c:A
17 6mao:A 137 160 0.2249 0.2774 0.2375 1.99e-05
18 4aoo:A 143 145 0.2426 0.2867 0.2828 0.004 4ao5:A, 4ao5:B, 4ao5:C, 4ao5:D, 4ao5:E, 4ao5:F, 4aoo:B, 4aoo:C, 4aoo:D, 4aoz:A, 4aoz:B, 4aoz:C, 4apz:1, 4apz:Y, 4apz:2, 4apz:3, 4apz:4, 4apz:5, 4apz:7, 4apz:6, 4apz:8, 4apz:9, 4apz:a, 4apz:A, 4apz:C, 4apz:B, 4apz:D, 4apz:E, 4apz:F, 4apz:G, 4apz:I, 4apz:H, 4apz:J, 4apz:K, 4apz:L, 4apz:M, 4apz:N, 4apz:O, 4apz:P, 4apz:R, 4apz:Q, 4apz:S, 4apz:U, 4apz:T, 4apz:V, 4apz:W, 4apz:X, 4apz:Z, 4apz:b, 4apz:d, 4apz:c, 4apz:e, 4apz:g, 4apz:f, 4apz:h, 4apz:j, 4apz:i, 4apz:k, 4apz:m, 4apz:l, 4b0h:A, 4b0h:B, 4b0h:C, 2xce:A, 2xce:B, 2xce:C, 2xce:D, 2xce:E, 2xce:F, 2xy3:A, 2xy3:B, 2xy3:C, 2xy3:D, 2xy3:E, 2xy3:F
19 4xjc:A 177 64 0.1065 0.1017 0.2812 0.032 4xjc:E, 4xjc:C, 4xjc:B, 4xjc:F, 4xjc:D
20 6lj3:A 164 157 0.2367 0.2439 0.2548 0.45 6ky9:A, 6ky9:B, 6ky9:C, 6kz6:C, 6kz6:B, 6kz6:A, 6lis:A, 6lis:B, 6lis:C, 6lis:D, 6lis:F, 6lis:E, 6lj3:C, 6lj3:B
21 6n7j:L 214 54 0.0888 0.0701 0.2778 0.64
22 1jda:A 418 56 0.1065 0.0431 0.3214 0.85 2amg:A, 1gcy:A, 6iwk:A, 6iyg:A, 6j3x:A, 1jdc:A, 1jdd:A, 6jqb:A, 1qi3:A, 1qi4:A, 1qi5:A, 1qpk:A
23 7vo5:A 276 47 0.0888 0.0543 0.3191 3.8
24 8c6j:S 635 38 0.0769 0.0205 0.3421 4.7 7abi:O, 8ch6:X, 6ff4:O, 8i0r:J, 8i0s:J, 8i0t:J, 5mqf:O, 7qtt:X, 6zym:O
25 2glx:A 332 82 0.1361 0.0693 0.2805 5.1 2glx:B, 2glx:C, 2glx:D, 2glx:E, 2glx:F
26 7mfm:G 1483 37 0.0769 0.0088 0.3514 8.3 7mfm:H, 7mft:G
27 8ro0:W 496 74 0.1361 0.0464 0.3108 9.2 8ro1:W

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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