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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEPQGFVADATINTPNGVLVASGKHEDMYTAINELINKL
ERQLNKLQHKGEARRAA

The query sequence (length=97) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6cfk:1y 97 97 1.0000 1.0000 1.0000 5.84e-69 6cfk:2y, 6cfl:1y, 6cfl:2y, 8fc1:1y, 8fc1:2y, 8fc2:1y, 8fc2:2y, 8fc3:1y, 8fc3:2y, 8fc4:1y, 8fc4:2y, 8fc5:1y, 8fc5:2y, 8fc6:1y, 8fc6:2y, 5fdu:1x, 5fdu:2x, 5fdv:1x, 5fdv:2x, 6fkr:1z, 6fkr:2z, 7md7:1y, 7md7:2y, 7rqa:1y, 7rqa:2y, 7rqb:1y, 7rqb:2y, 7rqc:1y, 7rqc:2y, 7rqd:1y, 7rqd:2y, 7rqe:1y, 7rqe:2y, 8t8b:1y, 8t8b:2y, 8t8c:1y, 8t8c:2y, 4v4g:Aa, 4v4g:Ca, 4v4g:Ea, 4v4g:Ga, 4v4g:Ia, 4v8i:AY, 4v8i:CY, 5v8i:1y, 5v8i:2y, 8vtw:1y, 8vtw:2y, 8vty:1y, 8vty:2y, 6xhx:1y, 6xhx:2y, 4y4o:1y, 4y4o:2y
2 6h4n:x 95 85 0.3608 0.3684 0.4118 1.01e-16 6h58:x, 6h58:xx, 4v8h:AX, 4v8h:CX, 6y69:x
3 4hei:A 92 85 0.2887 0.3043 0.3294 1.48e-11 4hei:B
4 5njt:x 104 99 0.3402 0.3173 0.3333 7.75e-10
5 6gzq:V2 121 93 0.2474 0.1983 0.2581 4.78e-09 6gzx:V3, 6gzx:V4, 6gzz:V3, 6gzz:V4
6 8uu4:w 102 96 0.3402 0.3235 0.3438 7.82e-09 8uu7:w
7 5myj:A 159 93 0.2990 0.1824 0.3118 1.51e-08
8 8rd8:D 105 101 0.2887 0.2667 0.2772 7.51e-06
9 6fxc:Av 162 92 0.2680 0.1605 0.2826 9.93e-06 6fxc:Bv, 5nd8:v, 5nd9:v, 5ngm:Av, 6s0x:v, 6s13:v
10 5mmj:y 116 96 0.2474 0.2069 0.2500 2.48e-04 6eri:BV, 5mmm:y, 5x8p:y, 5x8r:y
11 5w1j:A 584 33 0.1237 0.0205 0.3636 1.2 5w1j:B, 5w1l:A, 5w1l:B
12 4hxy:B 430 21 0.1031 0.0233 0.4762 2.3 4hxy:A
13 7k50:g 125 33 0.1237 0.0960 0.3636 2.3 7k51:g, 7k52:g, 7k53:g, 7k54:g, 7k55:g
14 8a3l:h 149 33 0.1237 0.0805 0.3636 2.7 7abz:G, 7ac7:G, 7acj:G, 7acr:G, 5ady:H, 5afi:H, 5aka:H, 8akn:h, 8am9:h, 8ana:h, 8ap4:h, 9ax7:h, 8aye:h, 8b0x:h, 7b5k:H, 3bbx:H, 8bf7:F, 8bge:F, 8bgh:F, 8bh4:F, 8bhj:F, 8bhl:F, 8bhn:F, 8bhp:F, 8bil:F, 8bim:F, 7bl2:H, 7bl3:H, 7bl4:H, 7bl5:H, 7bl6:H, 6bu8:09, 7bv8:H, 6by1:CH, 6by1:DH, 6c4i:H, 8c8x:H, 8c8y:H, 8c8z:H, 8cam:h, 8ceu:h, 8cgd:h, 8cgk:h, 9cg5:h, 9cg6:h, 9cg7:h, 7cpj:H, 4csu:H, 7d6z:H, 7d80:g, 6dnc:K, 8eiu:h, 8ekc:H, 8emm:h, 6enu:H, 9fbv:h, 8fiz:BK, 8fto:h, 8fzd:H, 8fze:H, 8fzg:H, 8fzh:H, 8g6w:h, 8g6x:h, 8g6y:h, 8g7p:H, 8g7q:H, 8g7r:H, 8g7s:H, 5gad:H, 5gae:H, 5gaf:H, 5gag:H, 5gah:H, 6gbz:H, 6gc0:H, 6gc4:H, 6gc8:H, 6gwt:H, 6gxm:H, 6gxn:H, 6gxo:H, 6gxp:H, 6h4n:H, 5h5u:H, 6h58:H, 6h58:HH, 6hrm:G, 8hsp:h, 8htz:h, 8hu1:h, 6i0y:H, 6i7v:DH, 6i7v:CH, 8ifb:h, 8ifc:h, 5iqr:G, 5it8:DH, 5it8:CH, 8j1z:h, 2j28:H, 3j5l:H, 5j5b:DH, 5j5b:CH, 3j7z:H, 5j7l:DH, 5j7l:CH, 3j8g:H, 5j88:DH, 5j88:CH, 5j8a:DH, 5j8a:CH, 3j9y:H, 3j9z:L9, 5j91:DH, 5j91:CH, 3ja1:LI, 3jbu:h, 3jbv:h, 3jcd:H, 3jce:H, 3jcj:G, 3jcn:H, 5jc9:DH, 5jc9:CH, 7jss:g, 7jsw:g, 7jsz:g, 5jte:BH, 7jt1:g, 7jt2:g, 7jt3:g, 5ju8:BH, 7k00:h, 5kcr:1I, 5kcs:1I, 5kps:G, 5kpv:F, 5kpw:F, 5kpx:F, 5l3p:I, 7lv0:g, 7lvk:P, 5lza:H, 5lzb:H, 5lzc:H, 5lzd:H, 5lze:H, 5lzf:H, 7m5d:G, 5mdv:G, 5mdw:G, 5mdy:G, 5mdz:G, 5mgp:H, 7n1p:LI, 7n2c:LI, 7n2u:LI, 7n2v:LI, 7n30:LI, 7n31:LI, 7nbu:h, 5nco:H, 5np6:f, 7nso:H, 7nsp:H, 7nsq:H, 5nwy:U, 7nwt:G, 7nww:H, 7o19:BH, 7o1a:BH, 7o1c:BH, 5o2r:H, 6o9j:H, 6ofx:g, 6og7:g, 6ogf:g, 6ogg:g, 6ogi:g, 7oif:H, 7oig:H, 7oii:H, 7oiz:h, 7oj0:h, 6om6:G, 6ore:G, 6orl:G, 6osk:G, 6osq:G, 6ost:G, 6ot3:G, 7ot5:H, 6ouo:G, 8p16:G, 8p17:G, 8p18:G, 7p3k:h, 8peg:i, 8phj:h, 6pj6:P, 7pjs:H, 7pjt:H, 7pju:H, 7pjv:H, 7pjw:H, 7pjx:H, 7pjy:H, 7pjz:H, 8pkl:i, 8pva:h, 7q4k:BH, 6q97:G, 6q98:G, 6q9a:G, 8qbt:H, 6qdw:h, 7qg8:U, 7qgh:U, 7qgn:U, 7qgr:U, 8qk7:G, 8qoa:h, 6qul:H, 8r3v:i2, 8r6c:h, 8r8m:h, 8rcl:i2, 8rcm:i2, 8rcs:i2, 8rct:i2, 8rpy:H, 8rpz:H, 8rq0:H, 8rq2:H, 6s0k:H, 7s1g:P, 7s1h:P, 7s1i:P, 7s1j:P, 7s1k:P, 7sa4:G, 7ss9:g, 7ssd:g, 7ssl:g, 7sso:g, 7ssw:g, 7st2:g, 7st6:g, 7st7:g, 8syl:H, 6szs:H, 6tbv:L091, 6tc3:L091, 7tos:L09, 4u1u:BH, 4u1u:DH, 4u1v:BH, 4u1v:DH, 4u20:BH, 4u20:DH, 4u24:BH, 4u24:DH, 4u25:BH, 4u25:DH, 4u26:BH, 4u26:DH, 4u27:BH, 4u27:DH, 5u4i:H, 6u48:CH, 5u9f:09, 5u9g:09, 7ug7:LI, 8upo:r, 8upr:r, 8uql:r, 8uqm:r, 8uqp:r, 8ur0:r, 8urh:r, 8uri:r, 8urx:r, 8ury:r, 4uy8:H, 5uyk:09, 5uyl:09, 5uym:09, 5uyn:09, 5uyp:09, 5uyq:09, 4v4h:BH, 4v4h:DH, 4v4q:BH, 4v4q:DH, 4v4v:BF, 4v50:BH, 4v50:DH, 4v52:BH, 4v52:DH, 4v53:BH, 4v53:DH, 4v54:BH, 4v54:DH, 4v55:BH, 4v55:DH, 4v56:BH, 4v56:DH, 4v57:BH, 4v57:DH, 4v5b:AH, 4v5h:BH, 4v5y:BH, 4v5y:DH, 4v64:BH, 4v64:DH, 4v65:B4, 4v66:B4, 4v69:BH, 4v6c:BH, 4v6c:DH, 4v6d:BH, 4v6d:DH, 4v6e:BH, 4v6e:DH, 4v6k:AI, 4v6l:BI, 4v6m:BH, 4v6n:AI, 4v6o:BI, 4v6p:BI, 4v6q:BI, 4v6r:BI, 4v6s:AI, 4v6t:BH, 4v6v:BL, 4v6y:BH, 4v6z:BH, 4v70:BH, 4v71:BH, 4v73:BH, 4v74:BH, 4v75:BH, 4v76:BH, 4v77:BH, 4v78:BH, 4v79:BH, 4v7a:BH, 4v7b:BH, 4v7c:BI, 4v7d:AI, 4v7i:AH, 4v7s:BH, 4v7s:DH, 4v7t:BH, 4v7t:DH, 4v7u:BH, 4v7u:DH, 4v7v:BH, 4v7v:DH, 4v9c:DH, 4v9c:BH, 4v9d:CH, 4v9d:DH, 4v9o:AH, 4v9o:CH, 4v9o:GH, 4v9o:EH, 4v9p:AH, 4v9p:CH, 4v9p:EH, 4v9p:GH, 8vs9:L09, 8vsa:L09, 6vu3:r, 6vwl:F, 6vwm:G, 6vwn:F, 6vyq:r, 6vyr:r, 6vys:r, 6vyt:r, 6vyu:r, 6vyw:r, 6vyx:r, 6vyy:r, 6vyz:r, 6vz2:r, 6vz3:r, 6vz5:r, 6vz7:r, 6vzj:r, 8w51:H, 5wdt:H, 6wd0:g, 6wd1:g, 6wd2:g, 6wd3:g, 6wd4:g, 6wd5:g, 6wd6:g, 6wd7:g, 6wd8:g, 6wd9:g, 6wda:g, 6wdb:g, 6wdc:g, 6wdd:g, 6wde:g, 6wdf:g, 6wdg:g, 6wdh:g, 6wdi:g, 6wdj:g, 6wdk:g, 6wdl:g, 6wdm:g, 5we4:H, 5we6:H, 4wf1:BH, 4wf1:DH, 5wf0:H, 5wfk:H, 5wfs:H, 6wnt:g, 6wnv:g, 6wnw:g, 4woi:BH, 4woi:CH, 4www:RH, 4www:YH, 6x6t:r, 6x7f:r, 6x7k:r, 6x9q:r, 6xdq:r, 6xdr:r, 6xgf:r, 6xii:r, 6xij:r, 7y7c:h, 7y7d:h, 7y7e:h, 7y7f:h, 7y7g:h, 7y7h:h, 4ybb:DH, 4ybb:CH, 7yla:P, 6ys3:h, 6ysr:H, 6yss:H, 6yst:H, 6ysu:H, 7z20:h, 7zod:h, 7zp8:h, 7zq5:h, 7zq6:h, 6ztj:BH, 6ztl:BH, 6ztm:BH, 6ztn:BH, 6zto:BH, 6ztp:BH, 7zta:L091, 6zu1:BH
15 7mq8:LH 746 71 0.2062 0.0268 0.2817 4.1 7mq9:LH, 7mqa:LH
16 2c8n:A 501 41 0.1443 0.0279 0.3415 5.4 2c7f:A, 2c7f:B, 2c7f:C, 2c7f:D, 2c7f:E, 2c7f:F, 2c8n:B, 2c8n:C, 2c8n:D, 2c8n:E, 2c8n:F, 5o80:A, 5o80:B, 5o80:C, 5o80:D, 5o80:E, 5o80:F, 5o82:A, 5o82:B, 5o82:C, 5o82:D, 5o82:E, 5o82:F
17 4bta:A 237 29 0.1031 0.0422 0.3448 5.9 4bt9:A, 4btb:A, 2v5f:A
18 1im8:A 225 31 0.1443 0.0622 0.4516 8.2 1im8:B
19 4pj3:A 1335 29 0.0928 0.0067 0.3103 8.6 7a5p:U, 6icz:Q, 6id1:Q, 7w59:Q, 7w5a:Q, 7w5b:Q, 5xjc:Q

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417