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BioLiP
>protein
TLYVSQLNEKINMQRLRVNLFLLFATFGEVVSMNFKKQRGQAFITMRTIDQASLAQISLNGERFFGKPLKVEFSKSETKT
L

The query sequence (length=81) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7b9v:Y 88 83 1.0000 0.9205 0.9759 1.37e-52 6bk8:r, 7dco:p, 6exn:Y, 6g90:Y, 5gmk:a, 6j6g:a, 6j6h:a, 6j6n:a, 6j6q:a, 5lj3:Y, 5lj5:Y, 5mq0:Y, 5nrl:Y, 7oqb:Y, 7oqe:Y, 5wsg:X, 5y88:p, 5ylz:p, 5zwm:p, 5zwo:p
2 3jb9:k 89 84 0.3951 0.3596 0.3810 6.38e-16
3 8ro1:p 76 75 0.3704 0.3947 0.4000 5.27e-14
4 7abg:B 169 84 0.3210 0.1538 0.3095 2.26e-13 7a5p:X, 1a9n:B, 1a9n:D, 7abi:B, 6ah0:p, 6ahd:p, 8c6j:Y, 8ch6:s, 7evo:G, 9fmd:p, 8h6e:2C, 8h6j:2C, 8h6k:2C, 8h6l:2C, 8hk1:G, 8i0p:p, 8i0r:p, 8i0s:p, 8i0t:p, 8i0u:p, 8i0v:p, 8i0w:p, 6icz:p, 6id0:p, 6id1:p, 5mqf:X, 6qdv:Y, 8qo9:2B, 6qx9:2B, 8qxd:2B, 8qzs:2B, 8r08:2B, 8r09:2B, 8r0a:2B, 8r0b:2B, 8rm5:2B, 7vpx:G, 7w59:p, 7w5a:p, 7w5b:p, 5xjc:p, 6y53:b, 6y5q:b, 5yzg:p, 5z56:p, 5z57:p, 5z58:p
5 4pkd:B 240 84 0.3210 0.1083 0.3095 1.93e-12 1aud:A, 7b0y:c, 3bo2:A, 3bo3:A, 3bo4:A, 4c4w:A, 4c4w:E, 3cul:A, 3cul:B, 3cun:A, 3cun:B, 7d7v:C, 5ddo:G, 5ddo:C, 5ddp:D, 5ddp:C, 5ddq:D, 5ddq:C, 5ddr:D, 5ddr:C, 7dlz:A, 7dlz:B, 1drz:A, 7dwh:A, 7dwh:B, 1dz5:A, 1dz5:B, 3egz:A, 5fj4:A, 5fj4:E, 3g8s:A, 3g8s:B, 3g8s:C, 3g8s:D, 3g8t:A, 3g8t:B, 3g8t:C, 3g8t:D, 3g96:A, 3g96:B, 3g96:C, 3g96:D, 3g9c:A, 3g9c:B, 3g9c:C, 3g9c:D, 8gxb:C, 8gxb:D, 8gxb:F, 8gxc:C, 8gxc:D, 8gxc:F, 3hhn:B, 3hhn:D, 3iin:A, 3irw:P, 3iwn:C, 3iwn:D, 8jy0:A, 8jy0:C, 8jy0:E, 3k0j:A, 3k0j:B, 3l3c:A, 3l3c:B, 3l3c:C, 3l3c:D, 6las:E, 6las:D, 6las:C, 6lau:E, 6lau:D, 6lau:C, 6lax:D, 6lax:E, 6lax:C, 6laz:D, 6laz:E, 6laz:C, 1m5k:C, 1m5k:F, 1m5o:C, 1m5o:F, 1m5p:C, 1m5p:F, 1m5v:C, 1m5v:F, 3mum:P, 3mur:P, 3mut:P, 3muv:P, 3mxh:P, 2nz4:A, 2nz4:B, 2nz4:C, 2nz4:D, 2oih:A, 2oj3:A, 3p49:B, 4pr6:A, 4prf:A, 7qr3:A, 7qr3:B, 7qr4:A, 6qx9:1A, 3r1h:A, 3r1h:D, 3r1l:A, 3r1l:D, 1sj3:P, 1sj4:P, 1sjf:A, 6sqn:A, 6sqn:B, 6sqn:C, 6sqq:AAA, 6sqq:BBB, 6sqq:CCC, 1u6b:A, 3ucu:P, 3ucz:P, 3ud3:P, 3ud4:P, 1urn:A, 1urn:B, 1urn:C, 1vbx:A, 1vby:A, 1vbz:A, 1vc0:A, 1vc5:A, 1vc6:A, 7vpx:M, 4w90:B, 4w92:B, 1zzn:A
6 6xh2:A 93 82 0.2963 0.2581 0.2927 2.03e-11 6cmn:A, 3k0j:D, 3k0j:C, 6xh0:A, 6xh1:A, 6xh3:A
7 6f4h:C 96 84 0.3704 0.3125 0.3571 6.01e-11 6f4g:B, 6f4g:E, 6f4h:A, 6f4h:E
8 2adc:A 208 84 0.3827 0.1490 0.3690 7.76e-08
9 6gd2:A 84 60 0.2716 0.2619 0.3667 4.83e-05 6g2k:A, 6g2k:B, 6gc5:A, 6gc5:B, 6gc5:C, 6gc5:D, 6gd2:B, 6gd3:B, 6gd3:C
10 2fy1:A 108 79 0.3086 0.2315 0.3165 6.74e-04
11 2mb0:B 95 77 0.2840 0.2421 0.2987 0.001
12 7zew:A 117 81 0.2593 0.1795 0.2593 0.002 7zex:A
13 7s7b:C 79 78 0.2716 0.2785 0.2821 0.004 7s7b:G, 7s7c:C
14 2xb2:D 89 79 0.2222 0.2022 0.2278 0.004 2xb2:Z
15 8i0v:4 161 77 0.2840 0.1429 0.2987 0.004
16 8i0v:4 161 80 0.2099 0.1056 0.2125 0.24
17 7zap:A 97 83 0.2840 0.2371 0.2771 0.005
18 7q33:A 93 86 0.3210 0.2796 0.3023 0.008 6pai:D, 6q0r:D, 6q0v:D, 6q0w:D, 6sj7:C, 6ud7:C, 6ue5:C
19 5mqf:o 223 80 0.2469 0.0897 0.2500 0.011 6id1:y, 7w59:y, 7w5a:y, 7w5b:y
20 2rra:A 99 62 0.1975 0.1616 0.2581 0.017 2kxn:B
21 2mgz:A 94 60 0.2099 0.1809 0.2833 0.061
22 4ed5:B 169 86 0.2840 0.1361 0.2674 0.13 4ed5:A
23 6ojt:B 481 58 0.2469 0.0416 0.3448 0.26 6ojr:A, 6ojt:A, 6ojw:B, 6ojw:A
24 1xrk:B 121 47 0.1605 0.1074 0.2766 0.34 1xrk:A, 2zhp:A, 2zhp:B
25 7uj1:B 270 52 0.1975 0.0593 0.3077 0.34 7pu5:B, 7pu5:D, 7pu5:H, 7pu5:J, 7pu5:L, 7sp0:B, 7uj1:A
26 5x8p:v 190 78 0.2469 0.1053 0.2564 0.36 5mmj:v, 5mmm:v, 5x8r:v
27 6r5k:H 394 75 0.2469 0.0508 0.2667 0.93 6r5k:D, 6r5k:F
28 2mqp:A 118 43 0.1728 0.1186 0.3256 1.4 7evr:A, 7evr:C
29 7qde:B 169 71 0.2469 0.1183 0.2817 1.9 7qdd:B
30 3bh3:D 245 47 0.1728 0.0571 0.2979 2.4 3bh3:A, 3bh3:B, 3bh3:C
31 6snj:A 131 38 0.1481 0.0916 0.3158 2.7 6gbm:B
32 7dco:X 128 79 0.2346 0.1484 0.2405 3.5 5gm6:V, 5zwm:X
33 2mkc:A 118 79 0.2346 0.1610 0.2405 3.7 2my3:A
34 2x1f:A 94 58 0.2222 0.1915 0.3103 4.0 2km8:B, 2x1a:A
35 7pw9:A 1952 77 0.2716 0.0113 0.2857 4.2 7pw4:A, 7pw5:A, 7pw6:A, 7pw7:A, 7pw8:A, 6z3r:A
36 6syt:A 1896 77 0.2716 0.0116 0.2857 4.3
37 2l41:A 77 61 0.2222 0.2338 0.2951 4.4 2xnr:A
38 1h5q:A 260 44 0.1605 0.0500 0.2955 4.9 1h5q:B, 1h5q:C, 1h5q:D, 1h5q:E, 1h5q:F, 1h5q:G, 1h5q:H, 1h5q:I, 1h5q:J, 1h5q:K, 1h5q:L
39 1fnx:H 174 65 0.1728 0.0805 0.2154 5.4 1fxl:A, 1g2e:A
40 5t9g:C 811 41 0.1481 0.0148 0.2927 6.4 5t9g:A, 5t9g:B, 5t9g:D
41 7xgx:A 607 46 0.1605 0.0214 0.2826 8.9 7xgx:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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