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BioLiP
>protein
TLYGLMAEFDDAEALLAAAEKTRDAGYKQFEAYTPMPIHGLDEAVGYRGTRLPWVIFGAGLLGASGMFALQTWINLVEYP
LNIGGRPLFSWPAFIPATFEGMVLLSAFAAVFGMIAACGLPRPYHPVFNAPNFERASVDRFFLCIEAADPKFELKQTRQF
LESLGPLAVSTVDN

The query sequence (length=174) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6loe:D 174 174 1.0000 1.0000 1.0000 1.02e-127
2 8k9e:D 175 173 0.5230 0.5200 0.5260 6.63e-59 8k9f:D, 8x2j:D
3 7jqh:A 313 53 0.1264 0.0703 0.4151 0.011 7jqi:A, 7jqj:A, 6ovl:A, 6oxn:A, 6p35:A
4 3kbo:A 312 102 0.1782 0.0994 0.3039 0.50 3kbo:B, 3kbo:C, 3kbo:D
5 7p6l:B 458 57 0.0977 0.0371 0.2982 5.0 7p6l:A, 7p6l:C, 7p6l:D
6 3w9z:A 290 43 0.0747 0.0448 0.3023 7.4
7 4bf9:A 318 43 0.0747 0.0409 0.3023 7.6 4bfa:A, 4bfa:B, 4yco:A, 4yco:B, 4yco:C, 4ycp:A
8 7ne2:D 292 60 0.0920 0.0548 0.2667 8.3 7ne2:A, 7ne2:B, 7ne2:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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