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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TLVSDFKQQKLEQEAQKNWDLFYKRNSTNFFKDRHWTTREFEELRSQKLTMLEAGCGVGNCLFPLLEEDPNIFAYACDFS
PRAIEYVKQNPLYDTERCKVFQCDLTKDDLLDHVPPESVDVVMLIFVLSAVHPDKMHLVLQNIYKVLKPGKSVLFRDYGL
YDHAMLRFKASSKLGENFYVRQDGTRSYFFTDDFLAQLFMDTGYEEVVNEYVFRETVNKKEGLCVPRVFLQSKFLKPPK

The query sequence (length=239) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7ezg:A 275 245 0.9623 0.8364 0.9388 2.32e-168 7f1e:A, 7f1e:B, 8owx:A, 8owx:B, 8p7b:A, 8p7c:A, 8p7c:C, 8p7d:A
2 8owy:A 172 223 0.7197 1.0000 0.7713 2.84e-114 8owy:B
3 8joz:A 257 133 0.1590 0.1479 0.2857 2.29e-05 4htf:A, 4htf:B
4 7clf:A 335 107 0.1130 0.0806 0.2523 1.08e-04 7clf:B
5 5wp4:A 485 180 0.1925 0.0948 0.2556 5.59e-04
6 6orr:C 273 88 0.0962 0.0842 0.2614 0.004 7bkg:A, 7bkg:B, 7bkg:C, 7bkg:D, 7ble:A, 7ble:B, 7ble:C, 7ble:D, 6chh:A, 6chh:B, 6chh:C, 6chh:D, 7egu:A, 7ehz:A, 7ei2:A, 7et7:A, 7et7:B, 7et7:C, 7et7:D, 7eu5:A, 7eu5:B, 7eu5:C, 7eu5:D, 2iip:A, 2iip:B, 2iip:C, 2iip:D, 7nbj:A, 7nbj:B, 7nbj:C, 7nbj:D, 7nbm:A, 7nbm:B, 7nbm:C, 7nbm:D, 7nbq:A, 7nbq:B, 7nbq:C, 7nbq:D, 6orr:A, 6orr:B, 6orr:D, 6pve:A, 6pve:B, 6pve:C, 6pve:D, 6pvs:A, 6pvs:B, 6pvs:C, 6pvs:D, 7rkk:A, 7rkk:B, 7rkl:A, 7rkl:B, 7rkl:C, 7rkl:D, 3rod:A, 3rod:B, 3rod:C, 3rod:D, 7sok:C, 7sok:A, 7sok:B, 7sok:D, 7wmc:A, 7wmc:B, 7wmt:A, 5xvq:A, 5xvq:B, 5yjf:A, 5yjf:B, 5yjf:C, 5yjf:D
7 5f8f:B 361 142 0.1548 0.1025 0.2606 0.015 5f8e:A, 5f8e:B, 5f8f:A, 5f8f:C
8 5wp5:A 463 180 0.1883 0.0972 0.2500 0.020 5wp5:B
9 5wp5:A 463 109 0.1130 0.0583 0.2477 0.074 5wp5:B
10 5bsz:A 247 92 0.1172 0.1134 0.3043 0.032
11 2i62:B 261 153 0.1339 0.1226 0.2092 0.038 2i62:A, 2i62:C, 2i62:D, 5xvk:A, 5xvk:B, 5yji:A, 5yji:B
12 3lcc:A 216 112 0.1172 0.1296 0.2500 0.042
13 4gek:G 231 106 0.1130 0.1169 0.2547 0.096 4gek:A, 4iwn:A, 4iwn:B
14 4ine:A 431 178 0.2008 0.1114 0.2697 0.36 4ine:B
15 7wzg:B 243 110 0.1339 0.1317 0.2909 0.47 7wzg:A, 7wzg:C, 7wzg:D, 7wzg:E, 7wzg:F
16 5bp9:A 237 150 0.1339 0.1350 0.2133 0.78
17 7mqa:NL 278 65 0.0837 0.0719 0.3077 1.4 7wts:3, 1zq9:A, 1zq9:B
18 5aog:A 307 52 0.0669 0.0521 0.3077 2.1
19 4qdk:A 219 41 0.0544 0.0594 0.3171 2.6 4qdj:A, 4qdk:B
20 3jwh:A 191 71 0.0837 0.1047 0.2817 2.7 3jwh:B
21 5lfu:A 487 45 0.0669 0.0329 0.3556 3.0 5lf5:A, 5lfr:A, 5lfr:B, 5lfv:B, 5lfv:A
22 9fcx:A 214 101 0.1172 0.1308 0.2772 4.0 9fcd:A, 9fcl:A, 9fcq:A, 9fcs:A, 9fcs:B, 9fcu:A, 9fcu:B, 9fcu:C, 9fcu:D, 9fcx:B, 9fcy:A, 9fcy:B, 9fcy:C, 9fcy:D, 9fd3:A, 9g0k:A, 9g0k:B
23 1qzz:A 340 131 0.1423 0.1000 0.2595 4.6 1r00:A, 1xds:A, 1xds:B, 1xdu:A
24 4a6d:A 345 104 0.1130 0.0783 0.2596 6.1 4a6e:A
25 6uak:A 297 104 0.1046 0.0842 0.2404 6.2
26 7dlh:A 302 34 0.0544 0.0430 0.3824 7.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218