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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TLQQGGMWIPSLLSGMNETEMKNLGMKISADDIYSVNHSSLKDAVPHFNGGCTSEVISPKGLILTNHHCGFDAIQNHSSV
DHDYLTNGFWAMKMEDELPNENLVVTFIVSINDVTAQILDGVASITSETEKQNKIQENITKVTASFAKEAWQENKVRTFF
EGNQYILFVTEVFKDVRLVGAPPSLIGKFGSDTDNWVWPRHTGDFSMFRVYANKNNHPAAYSKDNVPYIPKHFLPVSLDG
VQEDDFTMVMGYPGKTQEYLPSFAVAQIVNETNPAKIEIREAALKVQDGFMRKDNAIKIQYASKYAGVANYWKKWIGESQ
GLKKSNAIGLKQNFEKDFQQKVIAAGKQNEYGNLLADFQKYYTEITPYAVSRDYFNEVVVKNTELLSLGYKLYQLEQVFI
TKGEQAFNDRKENLIKSQADFFKDFNSTVDEKVFEQLVALYATKAPKEFLPISVEYKKFAPSIYSKSKLVDYANFKALLS
GDAKAVLKKISLDKGYAFVKSLADNYSKNIAPRYDEINLKINALQRIYMKAQLELYPNSRIFPDANSTLRVTYGKVKGYS
PKDAIYYNPTTYLDGAIEKYIPGDYEFDVPKKLIDLYNNKDYGQYGENGKLPVCFIGTNHTTGGNSGSPAVDAQGNLIGL
NFDRVWEGTMSDIHYDPSICRNVMVDMRYVLFIVDKFAGAKHLINEMKLVHPKK

The query sequence (length=694) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5jxf:A 694 694 1.0000 1.0000 1.0000 0.0 5jxf:B
2 6jtc:A 699 710 0.4078 0.4049 0.3986 1.53e-166 6jtc:B, 7r51:A, 7r51:B, 5sdc:A, 5sdc:B, 5sdd:A, 5sdd:B, 5sde:A, 5sde:B, 5sdf:A, 5sdf:B, 5sdg:A, 5sdg:B, 5sdh:A, 5sdh:B, 5sdi:A, 5sdi:B, 5sdj:A, 5sdk:A, 5sdl:A, 5sdl:B, 5sdm:A, 5sdm:B, 5sdn:A, 5sdn:B, 5sdo:A, 5sdo:B, 5sdp:A, 5sdp:B, 5sdq:A, 5sdq:B, 5sdr:A, 5sdr:B
3 5jwg:A 703 716 0.3991 0.3940 0.3869 1.06e-154 5jwg:B, 5jwi:A, 5jwi:B, 5jy0:A
4 5jxp:A 662 699 0.3746 0.3927 0.3720 2.65e-146
5 7dkb:A 697 719 0.3487 0.3472 0.3366 1.16e-97 7dkb:B, 7dkc:A, 7dkc:B, 7dkd:A, 7dkd:B, 7dke:A, 7dke:B, 8grt:A, 8grt:B
6 3woj:A 698 706 0.3184 0.3166 0.3130 9.19e-95 3woi:B, 3woj:B, 3wol:A, 3wol:B, 3wom:A, 3wom:B, 3won:A, 3won:B, 3woo:A, 3woo:B, 3wop:A, 3wop:B, 3woq:A, 3woq:B, 3wor:A, 3wor:B, 4y06:A, 4y06:B
7 2xwb:F 714 91 0.0375 0.0364 0.2857 0.64 3hrz:D, 3hs0:D, 3hs0:I, 7jtn:A, 7jtn:C, 7jtq:A, 7jtq:C, 7noz:F, 2ok5:A, 1q0p:A, 6qsw:AAA, 6qsw:BBB, 6qsw:CCC, 6qsx:AAA, 6qsx:BBB, 6rav:AAA, 6rav:BBB, 1rrk:A, 1rs0:A, 1rtk:A, 6rur:L, 6rur:J, 6ruv:J, 6ruv:L, 6t8u:AAA, 6t8u:BBB, 6t8u:CCC, 6t8v:AAA, 6t8v:BBB, 6t8w:AAA, 6t8w:BBB, 2win:I, 2win:J, 2win:K, 2win:L, 2xwb:H
8 4n4r:C 533 228 0.0720 0.0938 0.2193 0.84 4n4r:A
9 8a82:A 354 69 0.0245 0.0480 0.2464 1.2
10 4k1t:C 203 23 0.0159 0.0542 0.4783 3.2 4k1t:A, 4k1t:B
11 1zjc:A 413 80 0.0303 0.0508 0.2625 5.6
12 6d4k:A 238 69 0.0331 0.0966 0.3333 5.9 6d51:A, 4k73:A
13 6p2m:A 696 57 0.0288 0.0287 0.3509 7.6
14 5mrc:O 225 32 0.0187 0.0578 0.4062 7.8 3j6b:O, 5mre:O, 5mrf:O

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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