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BioLiP
>protein
TLLHAADVVLDPDTAHPELFLSEDRRSVRRGPSRQSIPDNPERFDCQPCVLGLESFSSGRHYWEVEVENVMVWAVGVCRD
SVERKGEALLVPQNGFWTLEMFGNQYRALSSPEKILPLKERLHRVGIFLDYESGDVSFYNMRDRSHIYTCPRSPFSGPLR
PFFRLGSDDSPLFICPAFIGAQGVTVPEGGLVLHRAE

The query sequence (length=197) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8hjt:A 197 197 1.0000 1.0000 1.0000 1.95e-146 8hjt:B
2 8igt:A 208 199 0.8020 0.7596 0.7940 4.03e-116 8jyc:A, 8jyc:B, 8jye:A, 8jye:B
3 8jya:B 191 178 0.5025 0.5183 0.5562 8.81e-66 8hjt:C, 8hjt:D, 8jy9:A, 8jy9:B, 8jyf:B
4 6j0k:A 191 178 0.4924 0.5079 0.5449 9.02e-62 6j0g:A, 6j0g:B, 6j0g:C, 6j0g:D, 6j0k:B
5 8ixv:A 187 178 0.4822 0.5080 0.5337 2.14e-60 8ize:A, 8izg:A, 6j06:A, 6j06:C, 6j06:B, 8jyc:C, 8jyc:D, 8jye:C, 8jye:D, 4n7u:A, 5zxk:A
6 4cg4:C 376 186 0.4619 0.2420 0.4892 1.34e-54 4cg4:D, 4cg4:E, 4cg4:F
7 8pd6:A 181 173 0.4569 0.4972 0.5202 3.56e-54
8 7ovx:A 174 173 0.3909 0.4425 0.4451 9.79e-42 8a5l:A, 8a5m:A, 8a5m:B, 8a8x:A, 8a8x:C, 7ow2:A, 7ow2:B, 7ow2:C, 7ow2:D, 8r5b:A, 8r5b:B, 8r5c:A, 7w0q:A, 7w0s:B, 7w0s:C, 7w0s:E, 7w0t:F, 7w0t:B, 7w0t:C, 7x6y:A, 7x6z:A, 7x70:A
9 7xt2:B 388 190 0.2995 0.1521 0.3105 6.71e-18 7xt2:A
10 7xyz:B 456 189 0.2741 0.1184 0.2857 7.56e-15 7xv2:A, 7xyy:A, 7xyy:B, 7xyz:A, 7xyz:C, 7xyz:D, 7xz0:A, 7xz0:B, 7xz1:A, 7xz1:B, 7xz2:A, 7xz2:B, 7xz2:C, 7xz2:D
11 4b3n:A 557 144 0.2234 0.0790 0.3056 2.18e-13 4b3n:B
12 7jhy:e 228 102 0.1421 0.1228 0.2745 2.1 7jhy:d, 7jhy:c, 7jhy:f, 7jhy:b, 7jhy:a
13 4hea:3 756 50 0.0711 0.0185 0.2800 4.8 2fug:3, 2fug:C, 2fug:L, 2fug:U, 4hea:D, 6i0d:3, 6i0d:D, 6i1p:3, 6i1p:D, 3i9v:3, 3i9v:C, 3iam:3, 3iam:C, 3ias:3, 3ias:C, 3ias:L, 3ias:U, 3m9s:3, 3m9s:C, 6q8o:3, 6q8o:D, 6q8w:3, 6q8w:D, 6q8x:3, 6q8x:D, 6y11:3, 6y11:D, 2ybb:3, 6ziy:3, 6zjl:3, 6zjn:3, 6zjy:3
14 4xyb:A 384 54 0.0914 0.0469 0.3333 6.2 4xyb:B, 4xye:A, 4xye:B
15 7vyx:A 1211 34 0.0660 0.0107 0.3824 9.6 7vyx:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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