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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TLEPRGYSLLIRGLIHSDRWREALLLLEDIKKVITPSKKNYNDCIQGALLHQDVNTAWNLYQELLGHDIVPMLETLKAFF
DFGKDIKDDNYSNKLLDILSYLRNNQLYPGESFAHSIKTWFESVPGKQWKGQFTTVRKSGQCSGCGKTIESIQLSPEEYE
CLKGKIMRDVITTPQELKRFENFIKSRPPFDVVIDGLNVAKMESQLLLNVVSQLAKRNLRLLVLGRKHMLRDEMEEVQKQ
ASCFFADDIDDPFLLYATLHSGNHCRFITRDLMDAKTQRLFFKWQQGHQLAIVNSKLTFQRILSYDTVVQTTGDSWHIPY
DEDLVERCSCEVPTKWLCLHQK

The query sequence (length=342) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4xgl:A 342 342 1.0000 1.0000 1.0000 0.0 4rou:B, 4rou:A, 4xgm:A
2 8cbk:E 470 375 0.9942 0.7234 0.9067 0.0 7onu:E
3 4g23:A 476 246 0.1725 0.1239 0.2398 3.49e-08 6bv5:A, 6bv6:A, 6bv8:A, 6bv9:A, 4g24:A, 4g25:A, 4g26:A, 6lvr:C, 6lvr:A
4 5i9h:A 368 75 0.0673 0.0625 0.3067 0.002 5i9d:A
5 5diz:A 474 251 0.1374 0.0992 0.1873 0.10 5diz:B, 5ft9:A, 5ft9:B
6 6xyw:BG 364 65 0.0643 0.0604 0.3385 0.61
7 7pnt:4 589 68 0.0526 0.0306 0.2647 1.5 7pnu:4, 7pnv:4, 7pnw:4
8 4z11:A 513 136 0.1023 0.0682 0.2574 2.8 4z0y:A, 4z0y:B, 4z0y:D, 4z0y:C, 4z0z:A, 4z0z:B, 4z0z:C, 4z0z:D, 4z10:A, 4z10:C, 4z10:B, 4z10:D, 4z10:E, 4z10:F, 4z11:B, 4z11:C, 4z11:D, 4z12:A, 4z12:B, 4z13:A, 4z13:B, 4z14:D, 4z14:B, 4z14:H, 4z14:F, 4z14:C, 4z14:E, 4z14:G, 4z14:A
9 8any:A4 595 73 0.0585 0.0336 0.2740 3.8 8oir:Ae, 8ois:Ae, 7po2:4, 7qi4:A4, 7qi5:A4, 7qi6:A4, 6zm5:A4, 6zm6:A4
10 2bun:A 121 50 0.0380 0.1074 0.2600 3.9
11 3ce2:A 595 56 0.0643 0.0370 0.3929 4.8
12 6mjg:A 386 49 0.0497 0.0440 0.3469 5.6 6mjf:A, 6mjf:B, 6mjf:C, 6mjf:D, 6mjf:F
13 2lcq:A 161 137 0.1082 0.2298 0.2701 6.1
14 7rd6:A 929 38 0.0351 0.0129 0.3158 6.2 7rd7:A, 7rd8:A
15 8hlc:A 1081 30 0.0409 0.0130 0.4667 8.4 7e7d:A, 7e7d:B, 7e7d:C, 8h3e:A, 8h3e:B, 8h3e:C, 8hlc:B, 8hlc:C, 7odl:A, 7odl:B, 7odl:C, 7wgx:A, 7wgx:B, 7wgx:C, 6zb4:C, 6zb4:B, 6zb4:A, 6zoz:A, 6zoz:B, 6zoz:C
16 1cxx:A 59 35 0.0351 0.2034 0.3429 8.6 1ibi:A, 1qli:A
17 6gaw:Ao 572 83 0.0556 0.0332 0.2289 9.0 6gaz:Ao
18 7pkt:w 120 70 0.0614 0.1750 0.3000 9.2
19 2wvz:B 742 70 0.0497 0.0229 0.2429 9.6 2wvx:A, 2wvx:B, 2wvx:C, 2wvx:D, 2wvz:A, 2wvz:C, 2wvz:D, 2ww0:A, 2ww0:B, 2ww0:C, 2ww0:D, 2ww0:E, 2ww0:F, 2ww0:G, 2ww0:H, 2ww1:A, 2ww1:B, 2ww1:C, 2ww1:D, 2ww3:A, 2ww3:B, 2ww3:C, 2ww3:D, 2ww3:E, 2ww3:F, 2wzs:A, 2wzs:B, 2wzs:C, 2wzs:D, 2wzs:E, 2wzs:F, 2wzs:G, 2wzs:H

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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