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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
TKVKRDISAFQKVIQDISLAVNKFNVDIERYVGGDASHLLADGNVLIKATLDGVQSLQNEPPLSSMEALALVGPVQDLSN
QILLAIQNLIDKKEPLVQAGFGGKVENNLRQQEEAAQKLSELVSTKVPHELADISRQLSDGIAAGIKKGIDAFAGTGP

The query sequence (length=158) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5csd:D 159 158 1.0000 0.9937 1.0000 1.90e-111 5csd:A, 5csd:B, 5csd:C, 5fb7:A, 5fb7:B, 5fb7:C, 5fb7:D, 3l1n:A
2 5e7x:A 155 154 0.5190 0.5290 0.5325 6.10e-51 5ecf:B, 5ecf:I, 5ecf:J
3 8h67:L 496 48 0.1013 0.0323 0.3333 0.76 8h7q:K, 8h7q:N, 8ip0:J, 8ip0:K, 8ip0:L
4 8dl3:B 344 28 0.0823 0.0378 0.4643 0.90 8dl3:A
5 4c7x:A 662 65 0.1646 0.0393 0.4000 1.2
6 5dkp:k 194 46 0.0886 0.0722 0.3043 1.4 5dkp:A, 5dkp:G, 5dkp:B, 5dkp:C, 5dkp:D, 5dkp:E, 5dkp:F, 5dkp:H, 5dkp:N, 5dkp:I, 5dkp:J, 5dkp:K, 5dkp:L, 5dkp:M, 5dkp:a, 5dkp:g, 5dkp:b, 5dkp:c, 5dkp:d, 5dkp:e, 5dkp:f, 5dkp:h, 5dkp:n, 5dkp:i, 5dkp:j, 5dkp:l, 5dkp:m, 6nah:A, 6nah:G, 6nah:B, 6nah:C, 6nah:D, 6nah:E, 6nah:F, 6nah:H, 6nah:N, 6nah:I, 6nah:J, 6nah:K, 6nah:L, 6nah:M, 6nah:O, 6nah:U, 6nah:P, 6nah:Q, 6nah:R, 6nah:S, 6nah:T, 6nah:V, 6nah:b, 6nah:W, 6nah:X, 6nah:Y, 6nah:Z, 6nah:a, 8szn:V, 8szn:b, 8szn:W, 8szn:X, 8szn:Y, 8szn:Z, 8szn:a, 8szn:H, 8szn:N, 8szn:I, 8szn:J, 8szn:K, 8szn:L, 8szn:M, 6w9t:F
7 6cng:A 281 52 0.1076 0.0605 0.3269 2.3 6cng:D
8 8hjo:B 440 48 0.1076 0.0386 0.3542 3.5 8hjf:A, 8hjf:B, 8hjg:A, 8hjg:B, 8hjh:A, 8hjh:B, 8hjk:A, 8hjl:A, 8hjl:B, 8hjn:A, 8hjn:B, 8hjo:A, 8hjp:A, 8hjp:B, 8j66:A
9 5cx6:B 665 47 0.1076 0.0256 0.3617 4.9 5cx6:A, 5cyr:B, 7om6:B, 7om6:A, 7om7:A, 7om7:B, 7om7:C, 7om7:D, 7oma:A, 7oma:B, 7oma:C, 7oma:D
10 5xy3:o 93 23 0.0633 0.1075 0.4348 5.2
11 4v61:BI 182 59 0.0886 0.0769 0.2373 7.9
12 2rc9:A 287 88 0.1519 0.0836 0.2727 8.0 2rc7:A, 2rc7:B, 2rc8:A, 2rc8:B, 2rc9:B
13 8uat:F 351 28 0.0633 0.0285 0.3571 9.3 3hf3:A, 3hf3:B, 3hf3:C, 3hf3:D, 3hgj:A, 3hgj:B, 3hgj:C, 3hgj:D, 5nux:A, 5nux:B, 5nux:C, 5nux:D, 5ogt:A, 5ogt:B, 5ogt:C, 5ogt:D, 8uaj:A, 8uaj:B, 8uaj:C, 8uaj:D, 8uat:B, 8uat:C, 8uat:D, 8uat:E, 8uat:G, 8uat:H, 8uat:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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