Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TKTNIQKDWEQREFIEDMSINIQKIVEFLNKFELSTRNKLSDLNEKLTILDRQVDYLEATFKT

The query sequence (length=63) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3pp5:A 63 63 1.0000 1.0000 1.0000 6.45e-40
2 4kis:D 287 36 0.2381 0.0523 0.4167 0.041
3 7bx9:A 168 28 0.1746 0.0655 0.3929 0.66
4 4m7x:A 273 30 0.1587 0.0366 0.3333 2.0 6avp:A, 6avp:C, 6avp:B, 6avp:D, 6awg:A, 6awg:B, 6awg:C, 6awg:D, 6awh:A, 6awh:B, 6awh:C, 6awh:D, 6awi:A, 6awi:B, 6awi:C, 6awi:D, 6awj:A, 6awj:B, 6awj:C, 6awj:D, 6ebv:A, 6ebv:B, 6ebv:C, 6ebv:D, 5elz:A, 2ews:A, 2ews:B, 5jic:A, 4m7y:A, 4m7y:B, 4nb4:A, 4nb4:B, 4nb4:C, 4nb4:D, 4nb4:E, 4nb4:F, 4nb4:G, 4nb4:H
5 2gam:C 374 45 0.2698 0.0455 0.3778 2.3 2gam:A, 2gam:B, 2gam:D, 3otk:A, 3otk:B, 3otk:C, 3otk:D
6 5t5h:N 172 24 0.1746 0.0640 0.4583 3.4
7 2akj:A 535 11 0.1111 0.0131 0.6364 3.6
8 6enn:B 106 37 0.1905 0.1132 0.3243 3.9 1co0:A, 1co0:B, 6ejw:A, 6ejw:B, 6ejw:C, 6ejw:D, 6ejz:A, 6ejz:C, 6ejz:B, 6ejz:D, 6ekp:A, 6ekp:B, 6elb:A, 6elb:B, 6elf:A, 6elf:B, 6elg:A, 6elg:B, 6eni:A, 6eni:B, 6enn:A, 6f7f:B, 6f7f:A, 6f7f:D, 6f7f:C, 6f7g:A, 6f7g:C, 6f9k:A, 6fal:A, 6fal:B, 1jhg:A, 2oz9:R, 1rcs:A, 1rcs:B, 6st7:A, 1tro:A, 1tro:C, 1tro:E, 1tro:G, 1trr:A, 1trr:B, 1trr:E, 1trr:G, 1trr:H, 1trr:D, 1trr:J, 1trr:K, 1wrp:R, 1wrs:R, 1wrs:S, 1zt9:A, 1zt9:B, 1zt9:D, 1zt9:E
9 5o0x:A 261 25 0.1905 0.0460 0.4800 4.4 8cak:A, 8cal:A, 8cao:A, 8cap:A, 8cap:E, 8cap:B, 8cap:C, 8cb0:A
10 7zpq:CA 1742 26 0.1270 0.0046 0.3077 5.3 7zrs:CA, 7zuw:CA
11 5b2r:B 1319 62 0.2698 0.0129 0.2742 6.8 5b2s:B, 5fq5:B, 5fw1:B, 8g1i:A, 6k3z:B, 6k4s:B, 6k4u:B, 6k57:B, 7qqw:B, 4un3:B, 4un4:B, 4un5:B, 8wus:A, 8wut:A, 8wuu:A
12 7nl1:D 400 17 0.1587 0.0250 0.5882 6.9 8bis:C, 8bis:A, 8biu:G, 8biu:A, 8biv:A, 8biv:E, 8biw:E, 8biw:A, 8bix:C, 8bix:A, 8biz:E, 8biz:A, 7nl1:A, 7nl1:B, 7nl1:C, 7nl1:E, 7nl1:F, 7nl1:G, 7nl1:H
13 3fyh:A 296 30 0.1746 0.0372 0.3667 7.2 2gdj:A
14 3k2s:A 243 44 0.2063 0.0535 0.2955 7.9 6cch:A, 3k2s:B, 7rsc:D, 7rsc:E, 7rse:D, 7rse:E, 6w4e:D

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417