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BioLiP
>protein
TKRIGVTVYDMSSFITEGKEGMDTYAKANNIELVWNSANNDVSTQASQVDSLINQGVDAIIVVPVQADSLGPQVASAKSK
GIPLLAVNAALETPDLAGNVQPDDVAAGAQEMQMMADRLGGKGNIVILQGPLGGSGEINRGKGIDQVLAKYPDIKVLAKD
TANWKRDEAVNKMKNWISSFGPQIDGVVAQNDDMGLGALQALKEAGRTGVPIVGIDGIEDGLNAVKSGDFIGTSLQNGTV
ELSAGLAVADALVKGEDVKTDPVYVMPAITKDNVDVAIEHVVTERQKFLDGLVELTQQNLKTGDIAYEGIPGQT

The query sequence (length=314) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4rs3:A 315 314 1.0000 0.9968 1.0000 0.0 5hko:A
2 4rsm:A 315 313 0.8790 0.8762 0.8818 0.0 4rsm:B, 4rsm:C, 4rsm:D
3 2ioy:A 274 274 0.3153 0.3613 0.3613 7.26e-53 2ioy:B
4 4yo7:A 287 277 0.2930 0.3206 0.3321 5.14e-38
5 7e7m:C 284 274 0.2834 0.3134 0.3248 5.14e-35 7e7m:A, 7e7m:B, 7e7m:D
6 4zjp:A 270 256 0.2580 0.3000 0.3164 2.32e-30
7 5ocp:A 302 256 0.2675 0.2781 0.3281 3.10e-28 5ocp:B
8 8fxu:A 310 303 0.3217 0.3258 0.3333 4.02e-28
9 5ibq:A 287 255 0.2643 0.2892 0.3255 1.11e-27 4ry0:A
10 6hbd:A 305 228 0.2389 0.2459 0.3289 1.80e-27 6hb0:A, 6hb0:B, 6hbd:B, 6hbm:A, 6hbm:B, 6hyh:A, 6hyh:B
11 5dte:B 287 232 0.2484 0.2718 0.3362 1.90e-27 5dte:A, 5dte:C, 5dte:D
12 2fn8:A 292 248 0.2516 0.2705 0.3185 6.74e-27
13 1dbp:A 271 246 0.2325 0.2694 0.2967 7.06e-26 1drj:A, 1drk:A, 2dri:A, 2gx6:A
14 2x7x:A 301 211 0.2325 0.2425 0.3460 1.26e-25 2x7x:B
15 2rjo:A 322 206 0.2102 0.2050 0.3204 1.64e-25
16 5kws:A 307 275 0.2739 0.2801 0.3127 1.20e-24
17 2gbp:A 309 275 0.2580 0.2621 0.2945 2.26e-23 2fvy:A, 2fw0:A, 8fxt:A, 3ga5:A, 3ga5:B, 3gbp:A, 1gca:A, 1gcg:A, 1glg:A, 2hph:A, 2ipl:A, 2ipm:A, 2ipn:A, 2qw1:A
18 2vk2:A 296 221 0.2325 0.2466 0.3303 1.74e-21
19 4z0n:A 307 276 0.2739 0.2801 0.3116 5.95e-21
20 1gud:A 288 235 0.2197 0.2396 0.2936 5.59e-20 1rpj:A, 8wl7:A, 8wl9:A, 8wlb:A
21 4irx:A 296 248 0.2229 0.2365 0.2823 1.81e-17 4irx:B
22 3ma0:A 313 231 0.2197 0.2204 0.2987 2.01e-16 3m9x:A, 3ma0:B, 3ma0:C
23 4ys6:A 324 196 0.1847 0.1790 0.2959 5.53e-15
24 4ry9:A 297 286 0.2357 0.2492 0.2587 1.41e-14 4ry9:B
25 4ywh:A 310 198 0.2006 0.2032 0.3182 3.57e-14 4ywh:B
26 4rxm:A 291 207 0.1592 0.1718 0.2415 6.10e-14 4rxm:B
27 4rxt:A 295 253 0.2325 0.2475 0.2885 4.29e-13
28 4wut:A 290 254 0.1975 0.2138 0.2441 1.06e-12
29 4pe6:B 324 178 0.1497 0.1451 0.2640 2.87e-11 4pe6:A
30 3ksm:A 276 230 0.2102 0.2391 0.2870 5.09e-11 3ksm:B
31 4ry8:B 321 207 0.1592 0.1558 0.2415 7.93e-10 4ry8:A, 4ry8:C, 4ry8:D
32 5dkv:A 303 252 0.2038 0.2112 0.2540 2.21e-09 5dkv:B, 5dkv:C, 5dkv:D
33 2h3h:A 313 236 0.2102 0.2109 0.2797 4.66e-09 3c6q:C, 3c6q:D, 2h3h:B, 2qvc:A, 2qvc:B, 2qvc:C, 2qvc:D
34 5hqj:A 289 229 0.1752 0.1903 0.2402 6.03e-08
35 4y9t:A 321 236 0.1656 0.1620 0.2203 1.15e-07 5br1:A
36 4wwh:A 329 265 0.2038 0.1945 0.2415 1.81e-07 4wwh:B
37 6bgd:A 373 101 0.1146 0.0965 0.3564 2.17e-07 6bgc:A, 6bgc:B, 5jx2:A
38 4wt7:A 294 188 0.1529 0.1633 0.2553 2.55e-07 4wt7:B
39 5xss:A 274 181 0.1369 0.1569 0.2376 1.10e-06 5xsj:X, 5xss:X, 5xss:B, 5xss:C
40 3urm:A 329 273 0.1911 0.1824 0.2198 2.66e-06 3urm:B, 3uug:A, 3uug:B
41 6gt9:A 283 214 0.1369 0.1519 0.2009 9.08e-06 6gt9:B, 6gt9:C, 6gt9:D, 6guq:A
42 5ysz:A 327 173 0.1465 0.1407 0.2659 6.00e-05
43 1tjy:A 316 73 0.0828 0.0823 0.3562 8.90e-05 5gta:A
44 4rk0:D 269 228 0.1561 0.1822 0.2149 1.09e-04 4rk0:A, 4rk0:B, 4rk0:C
45 4pz0:A 321 306 0.2229 0.2181 0.2288 3.13e-04
46 3t95:A 314 73 0.0701 0.0701 0.3014 0.003
47 1lbg:A 357 139 0.1242 0.1092 0.2806 0.007 2bjc:A, 2bjc:B, 1cjg:A, 1cjg:B, 1efa:A, 1efa:B, 1efa:C, 1jwl:B, 1jwl:A, 1jwl:C, 2kei:A, 2kei:B, 2kej:A, 2kej:B, 2kek:A, 2kek:B, 1l1m:A, 1l1m:B, 1lbg:D, 1lbh:A, 1lbh:B, 1lbh:C, 1lbh:D, 1lcc:A, 1lcd:A, 1osl:A, 1osl:B, 2p9h:A, 2p9h:B, 2paf:A, 2paf:B, 2pe5:A, 2pe5:B, 2pe5:C, 4rzt:A, 4rzt:B, 4rzt:C, 4rzt:D, 1tlf:A, 1tlf:B, 1tlf:C, 1tlf:D
48 4ru1:A 288 261 0.2102 0.2292 0.2529 0.007 4ru1:B, 4ru1:C, 4ru1:D, 4ru1:E, 4ru1:F, 4ru1:G, 4ru1:H, 4ru1:I, 4ru1:J, 4ru1:K, 4ru1:L
49 4yp9:B 342 82 0.0860 0.0789 0.3293 0.010 2hj9:A, 2hj9:B, 1jx6:A, 4yp9:A, 4yr7:A, 4yr7:B, 4yrz:A, 4yrz:B
50 7x0h:A 287 144 0.1051 0.1150 0.2292 0.043 7x0h:B, 7x0h:C, 7x0h:D
51 4rxu:A 340 81 0.0701 0.0647 0.2716 0.055
52 4rkr:A 274 44 0.0637 0.0730 0.4545 0.055 4rkr:B, 4rkr:C, 4rkr:D
53 4wzz:A 321 46 0.0510 0.0498 0.3478 0.062
54 3ejw:A 315 41 0.0478 0.0476 0.3659 0.14 3ejw:B
55 1ibs:B 299 114 0.1115 0.1171 0.3070 1.6 1dku:A, 1dku:B, 1ibs:A
56 4rk1:D 269 236 0.1688 0.1970 0.2246 2.2 4rk1:A, 4rk1:B, 4rk1:C, 4rk1:E, 4rk1:F
57 8wm7:C 658 53 0.0414 0.0198 0.2453 2.4 8w9m:C
58 4fe7:A 380 95 0.0860 0.0711 0.2842 3.4
59 7ofq:B 213 62 0.0605 0.0892 0.3065 4.8 7ofq:D, 7ofq:F, 7ofq:H, 7ofq:J, 7ofq:L, 7ofq:N, 7ofq:P, 7ofq:R, 7ofq:T, 7ofq:V, 7ofq:X, 7ofq:Z, 7ofq:b, 7ofq:d, 7ofq:f, 7ofq:h, 7ofq:j, 7ofq:l, 7ofq:n, 7ofq:p, 7ofq:r
60 5ulb:A 333 121 0.0955 0.0901 0.2479 5.8
61 8ipr:C 515 26 0.0382 0.0233 0.4615 8.4 8ipr:E
62 5hzd:A 476 93 0.0732 0.0483 0.2473 9.3 5i49:A, 5ido:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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