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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TKNTQTLMPLTERVNVQADSARINQIIDGCWVAVGTNKPHAIQRDFTNLFDGKPSYRFELKTEDNTLEGYAKGETKGRAE
FSYCYATSDDFKGLPADVYQKAQITKTVYHHGKGACPQGSSRDYEFSVYIPSSLDSNVSTIFAQWHGMPDRTLVQTPQGE
VKKLTVDEFVELEKTTFFKKNAGHEKVVRLDKQGNPMKDKNGKPVYKAGKLNGWLVEQGGYPPLAFGFSGGLFYIKANSD
RKWLTDKDDRCNANPGKTPVMKPLTSEYKASTIAYKLPFADFPKDCWITFRVHIDWTVYGKEAETIVKPGMLDVRMDYQE
QGKKVSKHIVNNEKILIGRNDEDGYYFKFGIYRVGDSTVPVCYNLAGYSERLE

The query sequence (length=373) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3ikw:A 373 371 0.9759 0.9759 0.9811 0.0 3ilr:A, 3imn:A, 3in9:A, 3ina:A
2 8h1l:B 423 156 0.1099 0.0969 0.2628 1.4 8h1l:C, 8h1n:A
3 8adl:C 782 74 0.0536 0.0256 0.2703 1.8 8adl:Q
4 4rpg:A 393 99 0.0670 0.0636 0.2525 2.2 4rpg:B, 4rpg:C, 4rph:B, 4rph:A, 4rph:C, 4rpj:A, 4rpj:B, 4rpj:C, 4rpk:B, 4rpk:A, 4rpk:C, 4rpl:B, 4rpl:A, 4rpl:C, 1v0j:A, 1v0j:B, 1v0j:C, 1v0j:D
5 3wb2:A 160 48 0.0456 0.1062 0.3542 3.3 5d5q:A, 5d5q:B, 5d5q:C, 5d5q:D, 3wb0:A, 3wb0:B, 3wb0:C, 3wb0:D, 3wb2:B, 3wb2:C, 3wb2:D
6 4wjb:A 409 95 0.0617 0.0562 0.2421 4.8 4wjb:B, 4wjb:C, 4wjb:D
7 6alw:A 288 53 0.0402 0.0521 0.2830 5.2 6alw:B, 6b9i:A, 6b9i:B
8 8qjd:A 1037 92 0.0724 0.0260 0.2935 5.7 8qjd:B
9 8t57:A 504 62 0.0322 0.0238 0.1935 6.2 8t57:B
10 5hvo:A 459 49 0.0509 0.0414 0.3878 7.5 5hvo:B, 5hvo:C, 5hvo:D
11 5olt:A 383 63 0.0483 0.0470 0.2857 8.3 5ojh:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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