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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TKETVYISSIALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVNVVDVFAMPQSGTGVSVEAVDDVFQAKMMDMLKQTGRDQ
MVVGWYHSHPGFGCWLSSVDVNTQKSFEQLNSRAVAVVVDPIQSVKGKVVIDAFRLIDTGAGLLNKANIQALIHGLNRHY
YSLNIDYHKTAKETKMLMNLH

The query sequence (length=181) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3jck:G 257 180 0.9282 0.6537 0.9333 1.09e-121 3j47:V, 4o8x:B, 4ocl:B, 4ocl:E, 4ocm:B, 4ocm:E, 4owp:B, 5u4p:B, 5w83:B
2 6msb:c 287 195 0.8287 0.5226 0.7692 1.43e-107 8cvt:c, 6msd:c, 6mse:c, 6msg:c, 6msh:c, 6msj:c, 6msk:c, 7qxn:c, 7qxp:c, 7qxu:c, 7qxw:c, 7qxx:c, 7qy7:c, 7qya:c, 7qyb:c, 5t0c:Ac, 5t0c:Bc, 5t0g:c, 5vfp:c, 5vfq:c, 5vfr:c, 5vfs:c, 7w37:c, 7w38:c, 7w39:c, 7w3a:c, 7w3b:c, 7w3c:c, 7w3f:c, 7w3g:c, 7w3h:c, 7w3i:c, 7w3j:c, 7w3k:c, 7w3m:c, 6wjd:c, 6wjn:c
3 4f7o:A 235 174 0.3923 0.3021 0.4080 1.29e-36 4f7o:B
4 6r6h:E 310 183 0.4033 0.2355 0.3989 8.43e-36 4d10:E, 4d10:M, 4d18:E, 4d18:M, 8h38:E, 8h3a:E, 8h3f:E, 5jog:A, 5joh:A, 5m5q:A, 6r7i:E, 4wsn:E, 4wsn:M, 4wsn:U, 4wsn:c, 4wsn:k, 4wsn:s
5 6fju:A 176 124 0.2486 0.2557 0.3629 5.40e-22 6fju:B, 6fnn:A, 6fnn:B, 6fno:A, 6fno:B
6 6gvw:B 262 155 0.2431 0.1679 0.2839 2.45e-12 5cw6:A, 6gvw:G, 6h3c:B, 6h3c:G, 6r8f:A, 6r8f:C
7 6w2s:5 324 158 0.2541 0.1420 0.2911 1.46e-11 8pj5:8, 8rg0:8
8 2znr:A 178 125 0.2044 0.2079 0.2960 3.83e-09 7l97:A, 2znv:A, 2znv:D
9 4msj:A 190 141 0.1934 0.1842 0.2482 2.45e-08 4jxe:A, 4jxe:B, 4k1r:A, 4k1r:C, 7lm3:A, 7lm3:B, 4ms7:A, 4ms7:B, 4msd:A, 4msd:B, 4msj:B, 4msj:C, 4msm:A, 4msm:C, 4msq:A, 4msq:C, 4nql:A, 4pqt:A, 4zd4:A, 4zd4:B, 4zd5:A, 4zd5:B, 4zfr:A, 4zft:A, 4zft:C
10 5cw3:A 248 106 0.1602 0.1169 0.2736 7.18e-06 5cw3:C, 5cw4:A
11 3rzv:A 179 118 0.1713 0.1732 0.2627 3.37e-05 3rzu:A, 3rzu:B, 3rzu:C, 3rzu:D, 3rzu:E, 3rzu:F, 3rzu:G
12 8azw:b 208 75 0.1271 0.1106 0.3067 1.2 8b2l:b3
13 2bov:A 173 172 0.2320 0.2428 0.2442 1.6 2a78:A, 2a9k:A, 8fjh:B, 8fji:B, 6p0i:B, 6p0j:B, 6p0k:B, 6p0l:B, 6p0m:B, 6p0n:B, 6p0o:B, 1u8y:A, 1u8y:B, 1u8z:A, 1u8z:B, 1u90:A, 1u90:B, 1uad:A, 1uad:B, 1zc3:A, 1zc3:C, 1zc4:A, 1zc4:C
14 3tb4:A 205 26 0.0497 0.0439 0.3462 1.7 3tg2:A
15 8h0l:A 152 58 0.0608 0.0724 0.1897 2.3 8h0l:B
16 1h65:A 257 96 0.1050 0.0739 0.1979 2.6 3bb1:A, 3bb1:B, 3bb1:C, 3bb1:D, 3bb1:E, 3bb1:F, 3bb1:G, 3bb1:H, 1h65:B, 1h65:C
17 7zee:A 282 104 0.1492 0.0957 0.2596 2.8 7zeg:A, 7zeg:B, 7zeh:A, 7zeh:B, 7zeh:C, 7zeh:D
18 8ddr:A 968 58 0.0884 0.0165 0.2759 3.5 8ddq:A, 8ddq:B, 8ddq:C, 8ddq:D, 8ddr:B, 8ddr:C, 8ddr:D, 8dds:A, 8dds:B, 8dds:C, 8dds:D, 8ddt:A, 8ddt:B, 8ddt:C, 8ddt:D, 8ddu:A, 8ddu:B, 8ddu:C, 8ddu:D, 8ddv:A, 8ddv:B, 8ddv:C, 8ddv:D, 8ddx:A, 8ddx:B, 8ddx:C, 8ed7:A, 8ed7:B, 8ed7:C, 8ed7:D, 8ed8:A, 8ed8:B, 8ed8:C, 8ed8:D, 8ed9:A, 8ed9:B, 8ed9:C, 8ed9:D
19 8ddx:D 992 58 0.0884 0.0161 0.2759 3.6
20 1bt4:A 361 55 0.1050 0.0526 0.3455 3.7 2c0r:A, 2c0r:B, 1w3u:A
21 8ddw:A 695 58 0.0884 0.0230 0.2759 4.3 8ddw:B, 8ddw:C
22 8ddw:D 719 58 0.0884 0.0223 0.2759 4.9
23 1kcc:A 333 72 0.1160 0.0631 0.2917 5.4 1kcd:A
24 5hy7:B 1170 81 0.0994 0.0154 0.2222 6.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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