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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TIRVIVSVDKAKFNPHEVLGIGGHIVYQFKLIPAVVVDVPANAVGKLKKMPGVEKVEFDHQAV

The query sequence (length=63) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3wiv:C 397 63 1.0000 0.1587 1.0000 1.28e-37 3a3n:A, 3a3n:B, 3a3o:A, 3a3o:B, 3a3p:A, 3a3p:B, 2e1p:A, 4jp8:A, 3vhq:A, 3vv2:A, 3vv2:B, 3wiu:A, 3wiu:B, 3wiu:C, 3wiv:A, 3wiv:B, 2z2x:A, 2z2y:A, 2z2y:B, 2z2y:C, 2z2y:D, 2z2z:A, 2z30:A, 2z30:B, 2z56:A, 2z56:B, 2z57:A, 2z57:B, 2z58:A, 2z58:B, 2zrq:A, 2zwo:A, 2zwo:B, 2zwo:C, 2zwp:A, 2zwp:B
2 3whi:A 355 41 0.2857 0.0507 0.4390 0.006 4dww:A, 5gl8:B, 1mee:A, 6o44:A, 6o44:B, 6pak:A, 6pak:B, 1scj:A, 3vyv:A, 3vyv:B, 3whi:B
3 7w2t:A 773 32 0.1905 0.0155 0.3750 3.6 5bvu:A, 5bx2:A, 5bx3:A, 5bx4:A, 5bx5:A, 7dks:A, 7dkt:A, 7dku:A, 7dkv:A, 7dkw:A, 7dkw:B, 7dkx:A, 7dky:A, 8i5o:A, 8i5p:A, 8i5p:B, 8i5q:A, 8i5q:B, 8i5r:A, 8i5s:A, 8i5t:A, 8i5u:A, 8jbo:A, 8jbo:B, 5ncx:A, 5npf:A, 5o0s:A, 5ost:A, 8r06:A, 7w2s:A, 7w2t:B, 7w2v:A, 7w2w:A, 7w2x:A
4 5fjs:B 702 21 0.1587 0.0142 0.4762 4.6
5 3hh8:A 280 61 0.2540 0.0571 0.2623 8.7 8yj6:C, 8yj7:B, 8yj7:D, 8yj7:A, 8yj7:C, 8yj8:A, 8yj8:B
6 7qep:S3 210 43 0.2222 0.0667 0.3256 9.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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