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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
TIPKPSDQVPDVDAFLNKIGRNCNELKDTFENNWNNLFQWDSKILKEKGVNIQQRKYILKQVHNYRNNRPIHEIKLGKKS
FFGGERKRKAFTAKWKAEN

The query sequence (length=99) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8om2:2 102 99 1.0000 0.9706 1.0000 3.32e-70 8d8j:2, 8d8k:2, 8d8l:2, 5mrc:22, 5mre:22, 5mrf:22, 8om3:2, 8om4:2
2 6yw5:33 193 69 0.2626 0.1347 0.3768 2.67e-08 6ywe:33, 6ywx:33, 6ywy:33
3 6z1p:BD 107 63 0.2323 0.2150 0.3651 1.10e-04
4 6sga:Cp 178 74 0.2121 0.1180 0.2838 0.002 6hiv:Cp, 6hiw:Cp, 6hiy:Cp, 7pua:Cp, 7pub:Cp, 6sgb:Cp
5 7aor:w 175 70 0.2020 0.1143 0.2857 0.002
6 7ane:w 155 70 0.2020 0.1290 0.2857 0.009
7 8owm:C 413 102 0.2929 0.0702 0.2843 0.17 8owm:A, 8owm:B, 8owm:D, 8owm:E, 8owm:F, 8own:A, 8own:B, 8own:C, 8own:D, 8own:E, 8own:F
8 1sg9:A 274 73 0.2121 0.0766 0.2877 0.29 1nv8:A, 1nv8:B, 1nv9:A, 1sg9:B, 1sg9:C, 1vq1:A, 1vq1:B
9 4yl6:A 88 36 0.1414 0.1591 0.3889 0.75
10 6xyw:BC 68 58 0.1717 0.2500 0.2931 1.5
11 6m23:A 936 23 0.1111 0.0118 0.4783 3.9 6m23:B
12 5lzw:ii 372 56 0.1616 0.0430 0.2857 6.2 5lzx:ii, 5lzy:ii, 5lzz:ii
13 7m4v:M 119 24 0.1010 0.0840 0.4167 6.6 7m4w:M, 7m4x:M, 7m4y:M, 7m4z:M, 7ryf:M, 7ryg:M, 7ryh:M, 7uvv:M, 7uvw:M, 7uvx:M, 7uvy:M, 7uvz:M, 7uw1:M, 6v39:M, 6v3a:M, 6v3b:M, 6v3d:M, 6yhs:J, 6ysi:J
14 6jci:A 704 55 0.1313 0.0185 0.2364 6.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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